RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 DRD3P35462 400 aa6.33□□□□□ -1.4
UPF2-203ENST00000397053 YBX1P67809 324 aaKnown RBP6.33□□□□□ -1.4
UPF2-203ENST00000397053 KLF9Q13886 244 aaPredicted RBP6.33□□□□□ -1.4
UPF2-203ENST00000397053 INPP5JQ15735 1006 aaPredicted RBP6.33□□□□□ -1.4
UPF2-203ENST00000397053 MIDNQ504T8 468 aa6.33□□□□□ -1.4
UPF2-203ENST00000397053 SMRP1Q8NCR6 262 aa6.33□□□□□ -1.4
UPF2-203ENST00000397053 ZNF738Q8NE65 137 aa6.33□□□□□ -1.4
UPF2-203ENST00000397053 RPS4Y2Q8TD47 263 aa6.33□□□□□ -1.4
UPF2-203ENST00000397053 TSPAN32Q96QS1 320 aa6.33□□□□□ -1.4
UPF2-203ENST00000397053 RNF115Q9Y4L5 304 aa6.33□□□□□ -1.4
UPF2-203ENST00000397053 TMEM56-RWDD3S4R434 201 aa6.33□□□□□ -1.4
UPF2-203ENST00000397053 LOXHD1Q8IVV2 1947 aa6.33□□□□□ -1.4
UPF2-203ENST00000397053 TRDCB7Z8K6 153 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 J3QR06 171 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 BCL2L11O43521 198 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 ZNF253O75346 499 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 OR5AC1P0C628 307 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 PDLIM4P50479 330 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 ZNF137PP52743 207 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 TEX261Q6UWH6 196 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 CLEC9AQ6UXN8 241 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 LINC01555Q8NAE3 123 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 GPR35Q9HC97 309 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 SLC17A5Q9NRA2 495 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 hCG_38984A0A1B0GV85 526 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 PRR19A6NJB7 356 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 AHRRA9YTQ3 701 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 HYAL3O43820 417 aaPredicted RBP6.32□□□□□ -1.4
UPF2-203ENST00000397053 CLDN14O95500 239 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 CST2P09228 141 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 FAM157CP0CG43 387 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 RPL24P83731 157 aaKnown RBP6.32□□□□□ -1.4
UPF2-203ENST00000397053 PMS2CLQ68D20 193 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 FAM214BQ7L5A3 538 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 TBC1D26Q86UD7 250 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 ZNF561Q8N587 486 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 ASB13Q8WXK3 278 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 ZNF714Q96N38 554 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 DUSP21Q9H596 190 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 SLC52A3Q9NQ40 469 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 LYRM2Q9NU23 88 aaPredicted RBP6.32□□□□□ -1.4
UPF2-203ENST00000397053 ROS1P08922 2347 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 KCNE1BA0A087WTH5 132 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 IGHV3-72A0A0B4J1Y9 119 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 PYCARD-AS1I3L0S3 204 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 KLK8O60259 260 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 PRSS42Q7Z5A4 293 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 VN1R4Q7Z5H5 301 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 OR1L6Q8NGR2 347 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 CCL13Q99616 98 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 LPAR5Q9H1C0 372 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 ZNF768Q9H5H4 540 aaKnown RBP6.32□□□□□ -1.4
UPF2-203ENST00000397053 MYH6P13533 1939 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.32□□□□□ -1.4
UPF2-203ENST00000397053 A0A1W2PPE3 182 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 ZNF815PA8K554 130 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 K7N7A8 449 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 TO15178 435 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 POLR2GP62487 172 aaKnown RBP eCLIP6.32□□□□□ -1.4
UPF2-203ENST00000397053 TEX30Q5JUR7 227 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 DCAF12L2Q5VW00 463 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 NSUN5P2Q63ZY6 315 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 SLC23A3Q6PIS1 610 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 MDP1Q86V88 176 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 C1orf174Q8IYL3 243 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 KCNK17Q96T54 332 aa6.32□□□□□ -1.4
UPF2-203ENST00000397053 A0A0A6YYJ9 748 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 TRAV39A0A0B4J263 110 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 TMEM262E9PQX1 116 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 RGS13O14921 159 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 MPZL1O95297 269 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 MC5RP33032 325 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 NUTF2P61970 127 aaKnown RBP6.31□□□□□ -1.4
UPF2-203ENST00000397053 KLRB1Q12918 225 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 PRSS8Q16651 343 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 C11orf87Q6NUJ2 197 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 LRRC75AQ8NAA5 344 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 MS4A10Q96PG2 267 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 DUX5Q96PT3 197 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 UCN2Q96RP3 112 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 TTTY12Q9BZ98 90 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 WDR54Q9H977 334 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 CACNA1DQ01668 2161 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 DUXBA0A1W2PPF3 345 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 LIPT2A6NK58 231 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 TMEM210A6NLX4 147 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 HYPMO75409 117 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 SFT2D2O95562 160 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 COX6CP09669 75 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 HTN3P15516 51 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 CDKN2AP42771 156 aaKnown RBP6.31□□□□□ -1.4
UPF2-203ENST00000397053 HINT1P49773 126 aaPredicted RBP6.31□□□□□ -1.4
UPF2-203ENST00000397053 B2MP61769 119 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 CDC20Q12834 499 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 IL24Q13007 206 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 IL13RA2Q14627 380 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 TGIF1Q15583 401 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 CXorf66Q5JRM2 361 aaPredicted RBP6.31□□□□□ -1.4
UPF2-203ENST00000397053 TMEM88Q6PEY1 159 aa6.31□□□□□ -1.4
UPF2-203ENST00000397053 SEZ6L2Q6UXD5 910 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms