RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 KIR3DL2P43630 455 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 SLC25A53Q5H9E4 307 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 LPCAT3Q6P1A2 487 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 ADGRE4PQ86SQ3 457 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 ZFP82Q8N141 532 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 FAM58AQ8N1B3 248 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 OSR2Q8N2R0 312 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 Q8NA96 180 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 MRGPRDQ8TDS7 321 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 OR2S2Q9NQN1 319 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 ZFP57Q9NU63 452 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 EML5Q05BV3 1969 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 LOC100289279A0A1B0GTE1 492 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 A0A1W2PPE3 182 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 PQLC2LA1A4F0 135 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 PHF1O43189 567 aaPredicted RBP8.85□□□□□ -0.99
COL6A3-205ENST00000392004 SYNGR1O43759 233 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 SSX5O60225 188 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 PDZK1IP1Q13113 114 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 SP5Q6BEB4 398 aaPredicted RBP8.85□□□□□ -0.99
COL6A3-205ENST00000392004 C11orf87Q6NUJ2 197 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 Q71RC1 249 aaPredicted RBP8.85□□□□□ -0.99
COL6A3-205ENST00000392004 LDLRAD3Q86YD5 345 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 ADPRHL1Q8NDY3 354 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 GFI1Q99684 422 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 PRDM14Q9GZV8 571 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 ZNF355PQ9NSJ1 428 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 MUC22E2RYF6 1773 aaPredicted RBP8.85□□□□□ -0.99
COL6A3-205ENST00000392004 IGHV2OR16-5A0A0B4J2B6 119 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 ZNF705EA8MWA4 302 aaPredicted RBP8.85□□□□□ -0.99
COL6A3-205ENST00000392004 H0YL77 283 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 WNT9BO14905 357 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 ABLIM2Q6H8Q1 611 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 DEGS2Q6QHC5 323 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 GABRG1Q8N1C3 465 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 OR4S1Q8NGB4 309 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 NANPQ8TBE9 248 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 ZDHHC16Q969W1 377 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 GPX7Q96SL4 187 aaPredicted RBP8.85□□□□□ -0.99
COL6A3-205ENST00000392004 C5orf63A6NC05 138 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 SULT1C2O00338 296 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 IGHG3P01860 377 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 GLAP06280 429 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 NPY4RP50391 375 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 GUCA2BQ16661 112 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 LHFPL2Q6ZUX7 228 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 PRSS35Q8N3Z0 413 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 SSC4DQ8WTU2 575 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 FAM157AC9JC47 383 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 CCSO14618 274 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 GEMIN2O14893 280 aaKnown RBP8.84□□□□□ -0.99
COL6A3-205ENST00000392004 TXNDC12O95881 172 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 HLA-AP01891 365 aaKnown RBP8.84□□□□□ -0.99
COL6A3-205ENST00000392004 TPT1P13693 172 aaKnown RBP8.84□□□□□ -0.99
COL6A3-205ENST00000392004 PSG7Q13046 419 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 FBXW12Q6X9E4 464 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 SFT2D1Q8WV19 159 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 CRHP06850 196 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 TIMP3P35625 211 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 MMP16P51512 607 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 OR52W1Q6IF63 320 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 NKAIN3Q8N8D7 197 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 CLCC1Q96S66 551 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 MRPL13Q9BYD1 178 aaKnown RBP8.84□□□□□ -0.99
COL6A3-205ENST00000392004 ALX4Q9H161 411 aaPredicted RBP8.84□□□□□ -0.99
COL6A3-205ENST00000392004 CLCF1Q9UBD9 225 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 CLN8Q9UBY8 286 aa8.84□□□□□ -0.99
COL6A3-205ENST00000392004 C1orf196B1AJZ1 125 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 HSD17B6O14756 317 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 SS18L1O75177 396 aaPredicted RBP8.83□□□□□ -1
COL6A3-205ENST00000392004 BCL3P20749 454 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 HOXA4Q00056 320 aaPredicted RBP8.83□□□□□ -1
COL6A3-205ENST00000392004 SLC9A3R2Q15599 337 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 LRRC10Q5BKY1 277 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 RBMS3Q6XE24 437 aaKnown RBP8.83□□□□□ -1
COL6A3-205ENST00000392004 LRRC75AQ8NAA5 344 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 OR10X1Q8NGY0 326 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 ARHGAP5-AS1Q96IT6 56 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 RGCCQ9H4X1 137 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 COA4Q9NYJ1 87 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 SPINT2O43291 252 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 OR8U9P0C7N5 309 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 KCNJ3P48549 501 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 SCAND1P57086 179 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 H3F3AP84243 136 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 ZNF345Q14585 488 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 PEA15Q15121 130 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 DPPA2Q7Z7J5 298 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 CATSPERDQ86XM0 798 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 OR8U1Q8NH10 309 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 ZNF286AQ9HBT8 521 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 TNFSF18Q9UNG2 199 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 TRAV14DV4A0A0A6YYC5 116 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 TMEM272A0A1B0GTI8 110 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 PRR32B1ATL7 298 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 CTAG2O75638 210 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 SERPINE2P07093 398 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 SPP1P10451 314 aa8.83□□□□□ -1
COL6A3-205ENST00000392004 NKX6-1P78426 367 aaPredicted RBP8.83□□□□□ -1
COL6A3-205ENST00000392004 SSBP1Q04837 148 aaKnown RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms