RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 AAED1Q7RTV5 226 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 WDR5BQ86VZ2 330 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 Q9N2K0 584 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 SIRT7Q9NRC8 400 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 CRIM1Q9NZV1 1036 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 TAAR3PQ9P1P4 343 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 TCFL5Q9UL49 500 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 IGHV1-45A0A0A0MS14 117 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 LY6G6EA0A0G2JKS1 128 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 LOC102723971A0A1B0GUV8 181 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 VDAC1P21796 283 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 RPS18P62269 152 aaKnown RBP14.06□□□□□ -0.16
SDC4-201ENST00000372733 NKX6-1P78426 367 aaPredicted RBP14.06□□□□□ -0.16
SDC4-201ENST00000372733 TLE4Q04727 773 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 KHDC3LQ587J8 217 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 SLC35E3Q7Z769 313 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 THNSL2Q86YJ6 484 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 HIST3H2BBQ8N257 126 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 CPT1CQ8TCG5 803 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 DNASE2BQ8WZ79 361 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 RBMXL1Q96E39 390 aaKnown RBP14.06□□□□□ -0.16
SDC4-201ENST00000372733 ABHD14BQ96IU4 210 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 U3KQA8 63 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 IGKV1-6A0A0C4DH72 117 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 ZNF716A6NP11 495 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 SEC14L6B5MCN3 397 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 PPP1R2P9O14990 202 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 YKT6O15498 198 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 HLA-HP01893 362 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 UMODP07911 640 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 CEACAM1P13688 526 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 TAS2R30P59541 319 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 RAB11AP62491 216 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 HLA-DRB3P79483 266 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 IZUMO4Q1ZYL8 232 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 RHOVQ96L33 236 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 FGF23Q9GZV9 251 aaPredicted RBP14.05□□□□□ -0.16
SDC4-201ENST00000372733 PRDM13Q9H4Q3 707 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 RNF115Q9Y4L5 304 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 CLEC18AA5D8T8 446 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 CXorf65A6NEN9 183 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 CXCL13O43927 109 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 HBE1P02100 147 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 COX6A1P12074 109 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 GPX4P36969 197 aaPredicted RBP14.05□□□□□ -0.16
SDC4-201ENST00000372733 ZNF295-AS1Q8N0V1 137 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 C17orf78Q8N4C9 275 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 CLEC18CQ8NCF0 446 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 NEK7Q8TDX7 302 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 SF3B5Q9BWJ5 86 aaKnown RBP14.05□□□□□ -0.16
SDC4-201ENST00000372733 OPA3Q9H6K4 179 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 ZNF391Q9UJN7 358 aa14.05□□□□□ -0.16
SDC4-201ENST00000372733 ZFP92A6NM28 416 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 NAPSAO96009 420 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 IGHV3-9P01782 118 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 CD200P41217 278 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 HAAOP46952 286 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 RAC3P60763 192 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 DEFA6Q01524 100 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 FAM90A2PQ658T7 463 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 OR2T2Q6IF00 324 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 SLC25A24Q6NUK1 477 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 SLC23A3Q6PIS1 610 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 FRZBQ92765 325 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 IMMP1LQ96LU5 166 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 RSG1Q9BU20 258 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 ZNF665Q9H7R5 613 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 FSCN3Q9NQT6 498 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 LOC102723996A0A087X1L8 192 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 TRGC1P0CF51 173 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 SPINK2P20155 84 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 B3GALT5-AS1P59052 145 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 IL24Q13007 206 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 MPV17LQ2QL34 196 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 C4orf17Q53FE4 359 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 TRIM61Q5EBN2 209 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 OR56B2PQ8NGI1 322 aa14.04□□□□□ -0.16
SDC4-201ENST00000372733 NOSIPQ9Y314 301 aaKnown RBP14.04□□□□□ -0.16
SDC4-201ENST00000372733 TUSC2O75896 110 aa14.03□□□□□ -0.16
SDC4-201ENST00000372733 CARD18P57730 90 aa14.03□□□□□ -0.16
SDC4-201ENST00000372733 GGNQ86UU5 652 aa14.03□□□□□ -0.16
SDC4-201ENST00000372733 ABHD5Q8WTS1 349 aa14.03□□□□□ -0.16
SDC4-201ENST00000372733 FAM210BQ96KR6 192 aa14.03□□□□□ -0.16
SDC4-201ENST00000372733 SH2D2AQ9NP31 389 aa14.03□□□□□ -0.16
SDC4-201ENST00000372733 F10P00742 488 aa14.03□□□□□ -0.16
SDC4-201ENST00000372733 MMP9P14780 707 aa14.03□□□□□ -0.16
SDC4-201ENST00000372733 STX12Q86Y82 276 aa14.03□□□□□ -0.16
SDC4-201ENST00000372733 S100PBPQ96BU1 408 aa14.03□□□□□ -0.16
SDC4-201ENST00000372733 SSX3Q99909 188 aa14.03□□□□□ -0.16
SDC4-201ENST00000372733 VSIRQ9H7M9 311 aa14.03□□□□□ -0.16
SDC4-201ENST00000372733 CACNA1EQ15878 2313 aa14.03□□□□□ -0.16
SDC4-201ENST00000372733 DUXBA0A1W2PPF3 345 aa14.02□□□□□ -0.16
SDC4-201ENST00000372733 CBR3O75828 277 aa14.02□□□□□ -0.16
SDC4-201ENST00000372733 FABP4P15090 132 aa14.02□□□□□ -0.16
SDC4-201ENST00000372733 GPM6AP51674 278 aa14.02□□□□□ -0.16
SDC4-201ENST00000372733 FGF8P55075 233 aaPredicted RBP14.02□□□□□ -0.16
SDC4-201ENST00000372733 LCN15Q6UWW0 184 aa14.02□□□□□ -0.16
SDC4-201ENST00000372733 Q6ZS49 121 aa14.02□□□□□ -0.16
SDC4-201ENST00000372733 C1orf87Q8N0U7 546 aa14.02□□□□□ -0.16
SDC4-201ENST00000372733 CPEB3Q8NE35 698 aaKnown RBP14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms