RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 OR9G4Q8NGQ1 327 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 MRPL37Q9BZE1 423 aaKnown RBP7.19□□□□□ -1.26
HMGB1-203ENST00000341423 A0A1B0GTL3 188 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 MOSP00540 346 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 MMP16P51512 607 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 GTF2A1P52655 376 aaPredicted RBP7.19□□□□□ -1.26
HMGB1-203ENST00000341423 CYCSP99999 105 aaKnown RBP7.19□□□□□ -1.26
HMGB1-203ENST00000341423 MFGE8Q08431 387 aaPredicted RBP7.19□□□□□ -1.26
HMGB1-203ENST00000341423 TMEM155Q4W5P6 130 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 OR4Q3Q8NH05 313 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 NPAS1Q99742 590 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 SDR39U1Q9NRG7 319 aaPredicted RBP7.19□□□□□ -1.26
HMGB1-203ENST00000341423 MAST2Q6P0Q8 1798 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 HTR2BP41595 481 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 ZNF154Q13106 437 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 C19orf54Q5BKX5 351 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 UBE2NLQ5JXB2 153 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 FNDC7Q5VTL7 733 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 ACOT7LQ6ZUV0 252 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 BCL2L2Q92843 193 aaPredicted RBP7.19□□□□□ -1.26
HMGB1-203ENST00000341423 ADIPOR1Q96A54 375 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 MED28Q9H204 178 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 IGKV3D-15A0A087WSY6 115 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 HMGN4O00479 90 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 IGKV3-15P01624 115 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 APELAP0DMC3 54 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 LHX2P50458 406 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 ZNF137PP52743 207 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 SLC25A1P53007 311 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 FOXA1P55317 472 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 CFAP77Q6ZQR2 320 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 OR52N4Q8NGI2 321 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 TMEM163Q8TC26 289 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 PFDN5Q99471 154 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 GMPR2Q9P2T1 348 aaKnown RBP7.19□□□□□ -1.26
HMGB1-203ENST00000341423 AK6Q9Y3D8 172 aaKnown RBP7.19□□□□□ -1.26
HMGB1-203ENST00000341423 LOC100130705A0A1B0GUX0 176 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 NPIPB6E9PJ23 425 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 CORTO00230 105 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 MINOS1Q5TGZ0 78 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 PRSS35Q8N3Z0 413 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 OR13C5Q8NGS8 318 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 CANT1Q8WVQ1 401 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 UBQLN3Q9H347 655 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 PRNDQ9UKY0 176 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 MINOS1-NBL1R4GNA1 71 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 DOCK10Q96BY6 2186 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 FAM221AA4D161 298 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 MPTX1A8MV57 137 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 SNRPGP15A8MWD9 76 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 SULT1B1O43704 296 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 PRKYO43930 277 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 OR7C2O60412 319 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 SPI1P17947 270 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 MAGEB1P43366 347 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 YBX1P67809 324 aaKnown RBP7.18□□□□□ -1.26
HMGB1-203ENST00000341423 FLI1Q01543 452 aaPredicted RBP7.18□□□□□ -1.26
HMGB1-203ENST00000341423 UNC119Q13432 240 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 C1QL4Q86Z23 238 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 HSD17B11Q8NBQ5 300 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 GIMAP1Q8WWP7 306 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 RNF167Q9H6Y7 350 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 ZDHHC11Q9H8X9 412 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 CDK5RAP2Q96SN8 1893 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 P2RX3P56373 397 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 RAB40BQ12829 278 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 FFAR4Q5NUL3 377 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 DEGS2Q6QHC5 323 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 CLRN3Q8NCR9 226 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 CHRDL1Q9BU40 450 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 SBF2Q86WG5 1849 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 OOSP1A8MZH6 123 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 IGKV3-20P01619 116 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 SPHARQ15513 63 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 CST9LP1Q5W188 147 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 FAM122CQ6P4D5 195 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 PAQR4Q8N4S7 273 aaPredicted RBP7.18□□□□□ -1.26
HMGB1-203ENST00000341423 STON2Q8WXE9 905 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 RBMXL1Q96E39 390 aaKnown RBP7.18□□□□□ -1.26
HMGB1-203ENST00000341423 MAP6Q96JE9 813 aa7.18□□□□□ -1.26
HMGB1-203ENST00000341423 CHCHD2Q9Y6H1 151 aaPredicted RBP7.18□□□□□ -1.26
HMGB1-203ENST00000341423 TRAV30A0A087WSZ9 112 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 ODAMA1E959 279 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 PLPP2O43688 288 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 CD160O95971 181 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 DUSP7Q16829 419 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 KLF17Q5JT82 389 aaPredicted RBP7.17□□□□□ -1.26
HMGB1-203ENST00000341423 GLYATL3Q5SZD4 288 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 OR8G2PQ6IF36 304 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 SKA3Q8IX90 412 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 LGI3Q8N145 548 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 ZCCHC24Q8N2G6 241 aaKnown RBP7.17□□□□□ -1.26
HMGB1-203ENST00000341423 ASB10Q8WXI3 467 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 OR2D2Q9H210 308 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 NEU3Q9UQ49 428 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 PKIGQ9Y2B9 76 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 TSC22D4Q9Y3Q8 395 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 CSAG2Q9Y5P2 127 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 PATJQ8NI35 1801 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 OR4E1P0C645 316 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms