RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 DYNC2H1Q8NCM8 4307 aaKnown RBP4.82□□□□□ -1.64
CSDE1-202ENST00000339438 NDUFS8O00217 210 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 ERI3O43414 337 aaKnown RBP4.82□□□□□ -1.64
CSDE1-202ENST00000339438 SCGB1D1O95968 90 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 OPN1LWP04000 364 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 ANOS1P23352 680 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 APOBEC3AP31941 199 aaPredicted RBP4.82□□□□□ -1.64
CSDE1-202ENST00000339438 CSNK1A1P48729 337 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 RAB28P51157 221 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 FGF8P55075 233 aaPredicted RBP4.82□□□□□ -1.64
CSDE1-202ENST00000339438 FAM3BP58499 235 aaPredicted RBP4.82□□□□□ -1.64
CSDE1-202ENST00000339438 OR2V1Q8NHB1 315 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 MOB3AQ96BX8 217 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 C1orf123Q9NWV4 160 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 SOHLH2Q9NX45 425 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 SLC45A2Q9UMX9 530 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 ANKRD11Q6UB99 2663 aaPredicted RBP4.82□□□□□ -1.64
CSDE1-202ENST00000339438 NSG1A0A0A6YYJ2 146 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 IGSF23A1L1A6 192 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 SYNDIG1LA6NDD5 238 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 XRCC2O43543 280 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 HCRTR1O43613 425 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 BPNT1O95861 308 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 PRH1P02810 166 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 WNT2P09544 360 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 GCH1P30793 250 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 S100A7P31151 101 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 CLDN17P56750 224 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 EWSR1Q01844 656 aaKnown RBP eCLIP4.82□□□□□ -1.64
CSDE1-202ENST00000339438 TMEM187Q14656 261 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 TAF9Q16594 264 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 LCN10Q6JVE6 187 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 C16orf82Q7Z2V1 217 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 TMEM144Q7Z5S9 345 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 CALHM1Q8IU99 346 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 OR4N5Q8IXE1 308 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 NKD1Q969G9 470 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 FAM46BQ96A09 425 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 TM4SF19Q96DZ7 209 aa4.82□□□□□ -1.64
CSDE1-202ENST00000339438 BORCS7-ASMTA0A0B4J1R7 106 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 SDCBPO00560 298 aaPredicted RBP4.81□□□□□ -1.64
CSDE1-202ENST00000339438 SYNGR4O95473 234 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 CLPSP04118 112 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 SMIM10L1P0DMW3 83 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 RPL4P36578 427 aaKnown RBP4.81□□□□□ -1.64
CSDE1-202ENST00000339438 MPV17LQ2QL34 196 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 DEFB134Q4QY38 66 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 C1orf185Q5T7R7 199 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 OR6N2Q8NGY6 317 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 EMG1Q92979 244 aaKnown RBP4.81□□□□□ -1.64
CSDE1-202ENST00000339438 CTHRC1Q96CG8 243 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 DDIT4LQ96D03 193 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 SMIM10Q96HG1 83 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 CCDC3Q9BQI4 270 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 OR10A5Q9H207 317 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 AK3Q9UIJ7 227 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 ST3GAL6Q9Y274 331 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 MEMO1Q9Y316 297 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 PCNX2A6NKB5 2137 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 RP1L1Q8IWN7 2480 aaPredicted RBP4.81□□□□□ -1.64
CSDE1-202ENST00000339438 GPR89AB7ZAQ6 455 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 TIAF1O95411 115 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 IFNA6P05013 189 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 CT62P0C5K7 136 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 GPR89BP0CG08 455 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 HIST1H1DP16402 221 aaKnown RBP4.81□□□□□ -1.64
CSDE1-202ENST00000339438 ARR3P36575 388 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 BIDP55957 195 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 RAB38P57729 211 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 ERVS71-1P61550 626 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 PRDX1Q06830 199 aaKnown RBP4.81□□□□□ -1.64
CSDE1-202ENST00000339438 ENDOGQ14249 297 aaKnown RBP4.81□□□□□ -1.64
CSDE1-202ENST00000339438 IL13RA2Q14627 380 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 EXOSC7Q15024 291 aaKnown RBP4.81□□□□□ -1.64
CSDE1-202ENST00000339438 ZNF74Q16587 644 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 SAXO1Q8IYX7 474 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 LRRC25Q8N386 305 aaPredicted RBP4.81□□□□□ -1.64
CSDE1-202ENST00000339438 OR2G3Q8NGZ4 309 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 MSI2Q96DH6 328 aaKnown RBP4.81□□□□□ -1.64
CSDE1-202ENST00000339438 RBMXL1Q96E39 390 aaKnown RBP4.81□□□□□ -1.64
CSDE1-202ENST00000339438 PGAM5Q96HS1 289 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 ARRDC1-AS1Q9H2J1 176 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 KIR3DX1Q9H7L2 352 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 LRP12Q9Y561 859 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 FLNCQ14315 2725 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 ZNF814B7Z6K7 855 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 GFRA3O60609 400 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 PITX3O75364 302 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 TMEM50AO95807 157 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 FREM3P0C091 2139 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 CTXN2P0C2S0 81 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 OR5G3P0C626 314 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 CNN1P51911 297 aaKnown RBP4.81□□□□□ -1.64
CSDE1-202ENST00000339438 CEBPGP53567 150 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 ZNF295-AS1Q8N0V1 137 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 FAM89BQ8N5H3 189 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 IL22RA1Q8N6P7 574 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 TMEM37Q8WXS4 190 aa4.81□□□□□ -1.64
CSDE1-202ENST00000339438 LIN37Q96GY3 246 aaPredicted RBP4.81□□□□□ -1.64
CSDE1-202ENST00000339438 REEP6Q96HR9 211 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms