RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SEBOXQ9HB31 216 aaPredicted RBP15.24■□□□□ 0.03
SYNPO-201ENST00000307662 ACTL6AO96019 429 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 CCL2P13500 99 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 SRP14P37108 136 aaKnown RBP15.24■□□□□ 0.03
SYNPO-201ENST00000307662 PRSS12P56730 875 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 EIF4E3Q8N5X7 224 aaKnown RBP15.24■□□□□ 0.03
SYNPO-201ENST00000307662 ADAMTS17Q8TE56 1095 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 LRRC29Q8WV35 223 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 IGSF23A1L1A6 192 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 C2CD4DB7Z1M9 353 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 BGLAPP02818 100 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 MMP16P51512 607 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 TMEM116Q8NCL8 245 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 ZPBPQ9BS86 351 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 EIF3GO75821 320 aaKnown RBP eCLIP15.23■□□□□ 0.03
SYNPO-201ENST00000307662 DDTP30046 118 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 SKP2Q13309 424 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 VAX1Q5SQQ9 334 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 ZNF362Q5T0B9 420 aaPredicted RBP15.23■□□□□ 0.03
SYNPO-201ENST00000307662 FDX2Q6P4F2 183 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 ZAR1Q86SH2 424 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 OR11H4Q8NGC9 324 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 MRGPRFQ96AM1 343 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 MYOZ1Q9NP98 299 aaPredicted RBP15.23■□□□□ 0.03
SYNPO-201ENST00000307662 OR2T8A6NH00 312 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 MPTX1A8MV57 137 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 SMPD2O60906 423 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 KIR3DL2P43630 455 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 SSMEM1Q8WWF3 244 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 ADAT3Q96EY9 351 aaPredicted RBP15.23■□□□□ 0.03
SYNPO-201ENST00000307662 MDKP21741 143 aaPredicted RBP15.23■□□□□ 0.03
SYNPO-201ENST00000307662 GALNSP34059 522 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 RIGQ13278 110 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 CD200R1LQ6Q8B3 271 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 C16orf47Q6ZP98 133 aaPredicted RBP15.23■□□□□ 0.03
SYNPO-201ENST00000307662 LRRC3BQ96PB8 259 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 OR2W1Q9Y3N9 320 aa15.23■□□□□ 0.03
SYNPO-201ENST00000307662 A0A1W2PPC1 479 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 A0A1W2PR80 420 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 OOEPA6NGQ2 149 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 C1QCP02747 245 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 PMELP40967 661 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 NRTNQ99748 197 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 MBD1Q9UIS9 605 aaPredicted RBP15.22■□□□□ 0.03
SYNPO-201ENST00000307662 COL24A1Q17RW2 1714 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 TRGV5A0A0B4J1U4 118 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 OR2M5A3KFT3 312 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 ISLRO14498 428 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 BRS3P32247 399 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 ZNF738Q8NE65 137 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 OR1B1Q8NGR6 318 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 IFITM10A6NMD0 228 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 ZNF766Q5HY98 468 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 DHRS13Q6UX07 377 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 RHOVQ96L33 236 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 TLNRD1Q9H1K6 362 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 KLHDC2Q9Y2U9 406 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 HAND1O96004 215 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 HSPB1P04792 205 aaKnown RBP15.22■□□□□ 0.03
SYNPO-201ENST00000307662 G6PCP35575 357 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 MGAT2Q10469 447 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 WDFY1Q8IWB7 410 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 GAL3ST2Q9H3Q3 398 aa15.22■□□□□ 0.03
SYNPO-201ENST00000307662 CORTO00230 105 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 GAMTQ14353 236 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 RFLNBQ8N5W9 214 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 C5orf17Q8NAS9 161 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 CHST5Q9GZS9 411 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 LYZP61626 148 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 ZPLD1Q8TCW7 415 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 CXXC4Q9H2H0 198 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 OR6C3Q9NZP0 311 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 DMRT1Q9Y5R6 373 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 C5orf52A6NGY3 159 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 SRD5A2P31213 254 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 GNB2P62879 340 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 SERF2P84101 59 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 PIGYQ3MUY2 71 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 OR1P1Q8NH06 330 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 SGMS2Q8NHU3 365 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 FAM60AQ9NP50 221 aa15.21■□□□□ 0.03
SYNPO-201ENST00000307662 AURKAIP1Q9NWT8 199 aaPredicted RBP15.21■□□□□ 0.03
SYNPO-201ENST00000307662 MARF1Q9Y4F3 1742 aaKnown RBP15.21■□□□□ 0.03
SYNPO-201ENST00000307662 RPL7P18124 248 aaKnown RBP15.21■□□□□ 0.03
SYNPO-201ENST00000307662 STRCP1A6NGW2 1772 aa15.21■□□□□ 0.02
SYNPO-201ENST00000307662 NINQ8N4C6 2090 aa15.21■□□□□ 0.02
SYNPO-201ENST00000307662 RPL36A-HNRNPH2H7BZ11 118 aa15.21■□□□□ 0.02
SYNPO-201ENST00000307662 FSTP19883 344 aa15.21■□□□□ 0.02
SYNPO-201ENST00000307662 FCARP24071 287 aa15.21■□□□□ 0.02
SYNPO-201ENST00000307662 F5P12259 2224 aa15.2■□□□□ 0.02
SYNPO-201ENST00000307662 SIAH2O43255 324 aa15.2■□□□□ 0.02
SYNPO-201ENST00000307662 PSMB2P49721 201 aa15.2■□□□□ 0.02
SYNPO-201ENST00000307662 HYAL1Q12794 435 aa15.2■□□□□ 0.02
SYNPO-201ENST00000307662 PSG2P11465 335 aa15.2■□□□□ 0.02
SYNPO-201ENST00000307662 MMP9P14780 707 aa15.2■□□□□ 0.02
SYNPO-201ENST00000307662 PPP1CAP62136 330 aa15.2■□□□□ 0.02
SYNPO-201ENST00000307662 ZNF260Q3ZCT1 412 aa15.2■□□□□ 0.02
SYNPO-201ENST00000307662 GPX7Q96SL4 187 aaPredicted RBP15.2■□□□□ 0.02
SYNPO-201ENST00000307662 PLA2G2FQ9BZM2 168 aa15.2■□□□□ 0.02
SYNPO-201ENST00000307662 FZR1Q9UM11 496 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms