RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 A0A1B0GU03 582 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 PPIAL4DF5H284 164 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 SPINT1O43278 529 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 NDUFA2O43678 99 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 PPIAL4FP0DN26 164 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 CCL4P13236 92 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 CCL2P13500 99 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 SLC35B1P78383 322 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 KHDC3LQ587J8 217 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 CLEC2AQ6UVW9 174 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 TBC1D26Q86UD7 250 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 PTPMT1Q8WUK0 201 aaPredicted RBP16.78■□□□□ 0.28
UPF1-201ENST00000262803 PPIAL4AQ9Y536 164 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 IGHV3-43A0A0B4J1X8 118 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 B4DEV8 164 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 IGHV3-43DP0DP04 118 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 C11orf42Q8N5U0 333 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 GCSAMQ8N6F7 178 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 MRPS18AQ9NVS2 196 aaKnown RBP16.78■□□□□ 0.28
UPF1-201ENST00000262803 SOCS1O15524 211 aa16.77■□□□□ 0.28
UPF1-201ENST00000262803 DPPA3Q6W0C5 159 aa16.77■□□□□ 0.28
UPF1-201ENST00000262803 C9orf62Q8N4C0 152 aa16.77■□□□□ 0.28
UPF1-201ENST00000262803 OR1B1Q8NGR6 318 aa16.77■□□□□ 0.28
UPF1-201ENST00000262803 DTD1Q8TEA8 209 aa16.77■□□□□ 0.28
UPF1-201ENST00000262803 CHST5Q9GZS9 411 aa16.77■□□□□ 0.28
UPF1-201ENST00000262803 WDR13Q9H1Z4 485 aa16.77■□□□□ 0.28
UPF1-201ENST00000262803 Q9N2K0 584 aa16.77■□□□□ 0.28
UPF1-201ENST00000262803 MED19A0JLT2 244 aaPredicted RBP16.77■□□□□ 0.28
UPF1-201ENST00000262803 MEX3AA1L020 520 aaKnown RBP16.77■□□□□ 0.28
UPF1-201ENST00000262803 MOSPD3O75425 235 aa16.77■□□□□ 0.28
UPF1-201ENST00000262803 HNRNPA3P51991 378 aaKnown RBP16.77■□□□□ 0.28
UPF1-201ENST00000262803 ZNF154Q13106 437 aa16.77■□□□□ 0.28
UPF1-201ENST00000262803 RPL36A-HNRNPH2H7BZ11 118 aa16.77■□□□□ 0.28
UPF1-201ENST00000262803 IFITM3Q01628 133 aa16.77■□□□□ 0.28
UPF1-201ENST00000262803 HSD17B13Q7Z5P4 300 aaPredicted RBP16.77■□□□□ 0.28
UPF1-201ENST00000262803 CABIN1Q9Y6J0 2220 aa16.77■□□□□ 0.27
UPF1-201ENST00000262803 OPN1MWP04001 364 aa16.77■□□□□ 0.27
UPF1-201ENST00000262803 OPN1MW2P0DN77 364 aa16.77■□□□□ 0.27
UPF1-201ENST00000262803 OPN1MW3P0DN78 364 aa16.77■□□□□ 0.27
UPF1-201ENST00000262803 USF1P22415 310 aaPredicted RBP16.77■□□□□ 0.27
UPF1-201ENST00000262803 TMEM33P57088 247 aa16.77■□□□□ 0.27
UPF1-201ENST00000262803 NHLH1Q02575 133 aa16.77■□□□□ 0.27
UPF1-201ENST00000262803 NHLH2Q02577 135 aa16.77■□□□□ 0.27
UPF1-201ENST00000262803 OR11H7Q8NGC8 314 aa16.77■□□□□ 0.27
UPF1-201ENST00000262803 ZMIZ1Q9ULJ6 1067 aa16.77■□□□□ 0.27
UPF1-201ENST00000262803 PHOX2AO14813 284 aa16.77■□□□□ 0.27
UPF1-201ENST00000262803 INPP5JQ15735 1006 aaPredicted RBP16.77■□□□□ 0.27
UPF1-201ENST00000262803 CLEC18BQ6UXF7 455 aa16.77■□□□□ 0.27
UPF1-201ENST00000262803 TOLLIPQ9H0E2 274 aa16.77■□□□□ 0.27
UPF1-201ENST00000262803 SLC2A9Q9NRM0 540 aa16.77■□□□□ 0.27
UPF1-201ENST00000262803 OPN4Q9UHM6 478 aa16.77■□□□□ 0.27
UPF1-201ENST00000262803 COL24A1Q17RW2 1714 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 GYPAP02724 150 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 CLEC9AQ6UXN8 241 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 CALHM1Q8IU99 346 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 OR2I1PQ8NGU4 316 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 RNF122Q9H9V4 155 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 OR2W1Q9Y3N9 320 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 PEBP1P30086 187 aaKnown RBP16.76■□□□□ 0.27
UPF1-201ENST00000262803 KLF9Q13886 244 aaPredicted RBP16.76■□□□□ 0.27
UPF1-201ENST00000262803 ZNF658BQ4V348 819 aaPredicted RBP16.76■□□□□ 0.27
UPF1-201ENST00000262803 RNASEKQ6P5S7 137 aaKnown RBP16.76■□□□□ 0.27
UPF1-201ENST00000262803 TMEM52Q8NDY8 209 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 ZFC3H1O60293 1989 aaKnown RBP16.76■□□□□ 0.27
UPF1-201ENST00000262803 CRHP06850 196 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 ORM2P19652 201 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 MMP16P51512 607 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 VAMP3Q15836 100 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 BLNKQ8WV28 456 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 TTTY12Q9BZ98 90 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 ARFGEF1Q9Y6D6 1849 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 CENPVL1A0A0U1RR11 272 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 NEURL1O76050 574 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 CCL3P10147 92 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 RPL7P18124 248 aaKnown RBP16.76■□□□□ 0.27
UPF1-201ENST00000262803 STPG1Q5TH74 334 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 OR10C1Q96KK4 312 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 LTBP4Q8N2S1 1624 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 DOCK5Q9H7D0 1870 aa16.76■□□□□ 0.27
UPF1-201ENST00000262803 CORTO00230 105 aa16.75■□□□□ 0.27
UPF1-201ENST00000262803 PDE6DO43924 150 aa16.75■□□□□ 0.27
UPF1-201ENST00000262803 MC5RP33032 325 aa16.75■□□□□ 0.27
UPF1-201ENST00000262803 KIR2DL2P43627 348 aaPredicted RBP16.75■□□□□ 0.27
UPF1-201ENST00000262803 ANGPTL4Q9BY76 406 aa16.75■□□□□ 0.27
UPF1-201ENST00000262803 PRR13Q9NZ81 148 aa16.75■□□□□ 0.27
UPF1-201ENST00000262803 NAGKQ9UJ70 344 aa16.75■□□□□ 0.27
UPF1-201ENST00000262803 C5orf17Q8NAS9 161 aa16.75■□□□□ 0.27
UPF1-201ENST00000262803 LRRC3BQ96PB8 259 aa16.75■□□□□ 0.27
UPF1-201ENST00000262803 OR5AL1P0C617 328 aa16.75■□□□□ 0.27
UPF1-201ENST00000262803 FAM87AP0C7U9 286 aa16.75■□□□□ 0.27
UPF1-201ENST00000262803 FAM24BQ8N5W8 94 aa16.75■□□□□ 0.27
UPF1-201ENST00000262803 SYNGR1O43759 233 aa16.74■□□□□ 0.27
UPF1-201ENST00000262803 COMPP49747 757 aaPredicted RBP16.74■□□□□ 0.27
UPF1-201ENST00000262803 ZNF66Q6ZN08 573 aa16.74■□□□□ 0.27
UPF1-201ENST00000262803 TUBGCP6Q96RT7 1819 aa16.74■□□□□ 0.27
UPF1-201ENST00000262803 PRR33A8MZF0 331 aa16.74■□□□□ 0.27
UPF1-201ENST00000262803 KIR3DL2P43630 455 aa16.74■□□□□ 0.27
UPF1-201ENST00000262803 HARBI1Q96MB7 349 aa16.74■□□□□ 0.27
UPF1-201ENST00000262803 TMEM204Q9BSN7 226 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms