RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 FOXG1P55316 489 aaPredicted RBP14.06□□□□□ -0.16
HOXD3-201ENST00000249440 PLP2Q04941 152 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 CLINT1Q14677 625 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 TSC22D1Q15714 1073 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 AWAT1Q58HT5 328 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 LINC00596Q86U02 117 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 CLEC18CQ8NCF0 446 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 GTF3AQ92664 365 aaKnown RBP14.06□□□□□ -0.16
HOXD3-201ENST00000249440 CLCC1Q96S66 551 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 TTTY12Q9BZ98 90 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 EGLN1Q9GZT9 426 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 IL36RNQ9UBH0 155 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 AHCTF1Q8WYP5 2266 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 UMAD1C9J7I0 102 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 ZNHIT1O43257 154 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 ADAM20O43506 726 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 SSSCA1O60232 199 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 NGFP01138 241 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 UCP1P25874 307 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 RAB5BP61020 215 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 OR1C1Q15619 314 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 DBX2Q6ZNG2 339 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 C5orf24Q7Z6I8 188 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 TMEM252Q8N6L7 170 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 FAM213BQ8TBF2 198 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 POM121L2Q96KW2 1035 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 HES7Q9BYE0 225 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 SLC35B3Q9H1N7 401 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 ZNF552Q9H707 407 aaPredicted RBP14.05□□□□□ -0.16
HOXD3-201ENST00000249440 KCNJ16Q9NPI9 418 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 ZNF407Q9C0G0 2248 aa14.05□□□□□ -0.16
HOXD3-201ENST00000249440 IGKV1D-13A0A0B4J2D9 117 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 IGSF23A1L1A6 192 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 C7orf77A4D0Y5 90 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 FAM166BA8MTA8 275 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 C9orf172C9J069 976 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 K7N7A8 449 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 HSD17B6O14756 317 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 HSPA12AO43301 675 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 SNRNP70P08621 437 aaKnown RBP14.04□□□□□ -0.16
HOXD3-201ENST00000249440 IGKV1-13P0DP09 117 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 NMSQ5H8A3 153 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 ZFP82Q8N141 532 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 SMDT1Q9H4I9 107 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 ESRP2Q9H6T0 727 aaKnown RBP14.04□□□□□ -0.16
HOXD3-201ENST00000249440 TUBA4BQ9H853 241 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 CCL28Q9NRJ3 127 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 A0A1B0GW64 132 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 ZNF98A6NK75 572 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 ANKRD30BLA7E2S9 258 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 CD300LBA8K4G0 201 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 M0R036 132 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 SYNGR1O43759 233 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 SLC34A2O95436 690 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 ZNF44P15621 663 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 AKR1C3P42330 323 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 ID3Q02535 119 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 CXorf66Q5JRM2 361 aaPredicted RBP14.04□□□□□ -0.16
HOXD3-201ENST00000249440 OR2G3Q8NGZ4 309 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 LILRB1Q8NHL6 650 aaPredicted RBP14.04□□□□□ -0.16
HOXD3-201ENST00000249440 GPR87Q9BY21 358 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 FBXO7Q9Y3I1 522 aa14.04□□□□□ -0.16
HOXD3-201ENST00000249440 RIF1Q5UIP0 2472 aaKnown RBP14.03□□□□□ -0.16
HOXD3-201ENST00000249440 PCP4L1A6NKN8 68 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 ZNF883P0CG24 379 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 MMP9P14780 707 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 OMGP23515 440 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 ATP6V0CP27449 155 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 S100GP29377 79 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 RNPS1Q15287 305 aaKnown RBP14.03□□□□□ -0.16
HOXD3-201ENST00000249440 RNF212Q495C1 297 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 CDCP2Q5VXM1 449 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 SHEQ5VZ18 495 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 SUMF2Q8NBJ7 301 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 OR5D13Q8NGL4 314 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 OR5P3Q8WZ94 311 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 IL22RA2Q969J5 263 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 MAGT1Q9H0U3 335 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 IGKV1-6A0A0C4DH72 117 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 PROB1E7EW31 1015 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 H0Y980 276 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 MT-ND4LP03901 98 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 IFNA4P05014 189 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 PTAFRP25105 342 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 ITGA3P26006 1051 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 BAXQ07812 192 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 ZNF573Q86YE8 665 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 OR5C1Q8NGR4 320 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 IP6K3Q96PC2 410 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 GPHA2Q96T91 129 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 MPC1Q9Y5U8 109 aa14.03□□□□□ -0.16
HOXD3-201ENST00000249440 PIGBOS1A0A0B4J2F0 54 aa14.02□□□□□ -0.16
HOXD3-201ENST00000249440 OR5B21A6NL26 309 aa14.02□□□□□ -0.16
HOXD3-201ENST00000249440 GALR2O43603 387 aaPredicted RBP14.02□□□□□ -0.16
HOXD3-201ENST00000249440 MPLP40238 635 aa14.02□□□□□ -0.16
HOXD3-201ENST00000249440 PLGLB1Q02325 96 aa14.02□□□□□ -0.16
HOXD3-201ENST00000249440 TMEM164Q5U3C3 297 aa14.02□□□□□ -0.16
HOXD3-201ENST00000249440 MCEMP1Q8IX19 187 aa14.02□□□□□ -0.16
HOXD3-201ENST00000249440 TMEM251Q8N6I4 163 aa14.02□□□□□ -0.16
HOXD3-201ENST00000249440 IL22RA1Q8N6P7 574 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms