RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 DEFB108AA8MXU0 73 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 RFPL4AL1F8VTS6 287 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 M0R233 179 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 CLDN14O95500 239 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 LHBP01229 141 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 ADH4P08319 380 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 OR4E1P0C645 316 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 LMO1P25800 156 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 C4orf46Q504U0 113 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 SLC25A42Q86VD7 318 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 DMRTB1Q96MA1 342 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 LIME1Q9H400 295 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 ING3Q9NXR8 418 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 TREM2Q9NZC2 230 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 GPR132Q9UNW8 380 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 HCFC1P51610 2035 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 PSPNO60542 156 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 ZNF205O95201 554 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 CD55P08174 381 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 SULT1A3P0DMM9 295 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 SULT1A4P0DMN0 295 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 CXCL3P19876 107 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 FPR2P25090 351 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 LOXP28300 417 aaPredicted RBP14.17□□□□□ -0.14
CLN3-252ENST00000636907 APOBEC3AP31941 199 aaPredicted RBP14.17□□□□□ -0.14
CLN3-252ENST00000636907 EIF2B2P49770 351 aaKnown RBP14.17□□□□□ -0.14
CLN3-252ENST00000636907 ATXN7L3Q14CW9 347 aaPredicted RBP14.17□□□□□ -0.14
CLN3-252ENST00000636907 ZNF880Q6PDB4 577 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 ZNF497Q6ZNH5 498 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 ZCCHC24Q8N2G6 241 aaKnown RBP14.17□□□□□ -0.14
CLN3-252ENST00000636907 MUC20Q8N307 709 aaPredicted RBP14.17□□□□□ -0.14
CLN3-252ENST00000636907 ZNF808Q8N4W9 903 aaPredicted RBP14.17□□□□□ -0.14
CLN3-252ENST00000636907 ADAD2Q8NCV1 583 aaKnown RBP14.17□□□□□ -0.14
CLN3-252ENST00000636907 OR5T2Q8NGG2 359 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 LILRB1Q8NHL6 650 aaPredicted RBP14.17□□□□□ -0.14
CLN3-252ENST00000636907 DIRC2Q96SL1 478 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 METRNQ9UJH8 293 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 HIVEP3Q5T1R4 2406 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 ICE1Q9Y2F5 2266 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 SCTP09683 121 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 BAMBIQ13145 260 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 IGSF11Q5DX21 431 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 DHRS11Q6UWP2 260 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 PEG10Q86TG7 708 aaKnown RBP14.17□□□□□ -0.14
CLN3-252ENST00000636907 CD177Q8N6Q3 437 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 PIK3IP1Q96FE7 263 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 TMPRSS13Q9BYE2 586 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 C5orf66Q9H5L9 145 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 CISD1Q9NZ45 108 aaKnown RBP14.17□□□□□ -0.14
CLN3-252ENST00000636907 WIPI2Q9Y4P8 454 aa14.17□□□□□ -0.14
CLN3-252ENST00000636907 IGHV3OR15-7A0A075B7D8 119 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 KIR2DS1A0A191URI9 304 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 TRDCB7Z8K6 153 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 IFNL4K9M1U5 179 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 FABP7O15540 132 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 PSG2P11465 335 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 RCC1P18754 421 aaPredicted RBP14.16□□□□□ -0.14
CLN3-252ENST00000636907 AGAP20933 346 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 KIR2DS4P43632 304 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 CCL8P80075 99 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 COL10A1Q03692 680 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 KIR2DS1Q14954 304 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 EFNB3Q15768 340 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 MST1LQ2TV78 715 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 FAM90A1Q86YD7 464 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 GAPTQ8N292 157 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 Q8TCH9 128 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 ZNF431Q8TF32 576 aaPredicted RBP14.16□□□□□ -0.14
CLN3-252ENST00000636907 ERGIC1Q969X5 290 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 SCGB3A2Q96PL1 93 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 RNF7Q9UBF6 113 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 DNAJB11Q9UBS4 358 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 NPTNQ9Y639 398 aa14.16□□□□□ -0.14
CLN3-252ENST00000636907 CACNA1BQ00975 2339 aa14.15□□□□□ -0.14
CLN3-252ENST00000636907 IGKV1D-17A0A075B6S4 117 aa14.15□□□□□ -0.14
CLN3-252ENST00000636907 CYB5R3P00387 301 aaPredicted RBP14.15□□□□□ -0.14
CLN3-252ENST00000636907 PRDX2P32119 198 aa14.15□□□□□ -0.14
CLN3-252ENST00000636907 UBE2MP61081 183 aaKnown RBP14.15□□□□□ -0.14
CLN3-252ENST00000636907 DHRS2Q13268 280 aa14.15□□□□□ -0.14
CLN3-252ENST00000636907 PPP1R1AQ13522 171 aa14.15□□□□□ -0.14
CLN3-252ENST00000636907 TESK1Q15569 626 aa14.15□□□□□ -0.14
CLN3-252ENST00000636907 FAM201AQ5SY85 155 aa14.15□□□□□ -0.14
CLN3-252ENST00000636907 TCTE3Q8IZS6 198 aa14.15□□□□□ -0.14
CLN3-252ENST00000636907 BBC3Q96PG8 261 aaPredicted RBP14.15□□□□□ -0.14
CLN3-252ENST00000636907 RTBDNQ9BSG5 229 aaPredicted RBP14.15□□□□□ -0.14
CLN3-252ENST00000636907 TMEM204Q9BSN7 226 aa14.15□□□□□ -0.14
CLN3-252ENST00000636907 ZNF222Q9UK12 451 aa14.15□□□□□ -0.14
CLN3-252ENST00000636907 CFAP46Q8IYW2 2715 aa14.15□□□□□ -0.14
CLN3-252ENST00000636907 TRAV39A0A0B4J263 110 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 B9A039 149 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 H7C1Q1 480 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 AKR1C4P17516 323 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 TNFRSF1AP19438 455 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 PI3P19957 117 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 ZBTB25P24278 435 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 FCGR2CP31995 323 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 CD80P33681 288 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 OR3A1P47881 315 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 HLA-DRB3P79483 266 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 HERPUD1Q15011 391 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms