RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 OR6F1Q8NGZ6 308 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 ITLN1Q8WWA0 313 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 HDHD3Q9BSH5 251 aaPredicted RBP8.91□□□□□ -0.98
CLN3-248ENST00000636355 DNTTIP1Q9H147 329 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 MED28Q9H204 178 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 NCOR1P1Q9H4R4 102 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 TMEM165Q9HC07 324 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 ING3Q9NXR8 418 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 ZNF581Q9P0T4 197 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 RNF7Q9UBF6 113 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 SLC23A1Q9UHI7 598 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 ADGRG4Q8IZF6 3080 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 OR2AT4A6NND4 320 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 TRDCB7Z8K6 153 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 B8ZZF3 427 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 E7EQL1 145 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.9□□□□□ -0.98
CLN3-248ENST00000636355 FABP7O15540 132 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 SPRY3O43610 288 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 PMP2P02689 132 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 TK1P04183 234 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 RLN1P04808 185 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 IRF2P14316 349 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 IGFBP2P18065 325 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 LOXP28300 417 aaPredicted RBP8.9□□□□□ -0.98
CLN3-248ENST00000636355 UQCRFS1P47985 274 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 UCP3P55916 312 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 SNRPD2P62316 118 aaKnown RBP8.9□□□□□ -0.98
CLN3-248ENST00000636355 HLA-DRB3P79483 266 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 C11orf91Q3C1V1 193 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 ZNF660Q6AZW8 331 aaPredicted RBP8.9□□□□□ -0.98
CLN3-248ENST00000636355 SLC35E4Q6ICL7 350 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 LPCAT3Q6P1A2 487 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 C11orf88Q6PI97 169 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 DHRS11Q6UWP2 260 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 SLC36A1Q7Z2H8 476 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 SLC25A42Q86VD7 318 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 MOGAT3Q86VF5 341 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 SPICQ8N5J4 248 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 GCSAMQ8N6F7 178 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 MRPL30Q8TCC3 161 aaKnown RBP8.9□□□□□ -0.98
CLN3-248ENST00000636355 ZNF486Q96H40 463 aaPredicted RBP8.9□□□□□ -0.98
CLN3-248ENST00000636355 HS3ST6Q96QI5 342 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 SAP30LQ9HAJ7 183 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 GCM1Q9NP62 436 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 RAB9BQ9NP90 201 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 DYNLRB1Q9NP97 96 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 MBNL3Q9NUK0 354 aaKnown RBP8.9□□□□□ -0.98
CLN3-248ENST00000636355 UFSP2Q9NUQ7 469 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 DNAJB11Q9UBS4 358 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 OPN4Q9UHM6 478 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 ZNF230Q9UIE0 474 aaPredicted RBP8.9□□□□□ -0.98
CLN3-248ENST00000636355 ZNF221Q9UK13 617 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 PCDHB10Q9UN67 800 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 PPP1R3CQ9UQK1 317 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 WIPI2Q9Y4P8 454 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 PKDREJQ9NTG1 2253 aa8.9□□□□□ -0.98
CLN3-248ENST00000636355 DYSFO75923 2080 aa8.9□□□□□ -0.99
CLN3-248ENST00000636355 ASH1LQ9NR48 2969 aaKnown RBP8.9□□□□□ -0.99
CLN3-248ENST00000636355 DSCAML1Q8TD84 2053 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 SIRPB1O00241 398 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 HS3ST1O14792 307 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 ZG16O60844 167 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 SULT1A3P0DMM9 295 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 SULT1A4P0DMN0 295 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 ANXA3P12429 323 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 GRNP28799 593 aaKnown RBP8.89□□□□□ -0.99
CLN3-248ENST00000636355 KCNJ8Q15842 424 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 TMEM128Q5BJH2 165 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 C6orf183Q5T699 404 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 TEX36Q5VZQ5 186 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 ZNF826PQ6ZT77 177 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 ZNF561Q8N587 486 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 LINC01560Q8TB33 94 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 ZFAND1Q8TCF1 268 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 ZNF431Q8TF32 576 aaPredicted RBP8.89□□□□□ -0.99
CLN3-248ENST00000636355 RDH5Q92781 318 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 MRGPRFQ96AM1 343 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 FAM234AQ9H0X4 552 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 WDR13Q9H1Z4 485 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 ZNF222Q9UK12 451 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 FLVCR2Q9UPI3 526 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 VSIG4Q9Y279 399 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 ROS1P08922 2347 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 RAI1Q7Z5J4 1906 aaPredicted RBP8.89□□□□□ -0.99
CLN3-248ENST00000636355 ICE1Q9Y2F5 2266 aa8.89□□□□□ -0.99
CLN3-248ENST00000636355 IGKV1D-8A0A087WSZ0 117 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 PIGBOS1A0A0B4J2F0 54 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 SIAH2O43255 324 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 SSNA1O43805 119 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 ZNF737O75373 536 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 CTSDP07339 412 aaPredicted RBP8.88□□□□□ -0.99
CLN3-248ENST00000636355 OR4E1P0C645 316 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 ANXA7P20073 488 aaKnown RBP8.88□□□□□ -0.99
CLN3-248ENST00000636355 DUSP1P28562 367 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 OR3A1P47881 315 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 MRPS11P82912 194 aaKnown RBP8.88□□□□□ -0.99
CLN3-248ENST00000636355 CBX3Q13185 183 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 CDSNQ15517 529 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 HMGN3Q15651 99 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms