RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 OR11H6Q8NGC7 330 aa13.17□□□□□ -0.3
LSM4-206ENST00000600289 OR13D1Q8NGV5 346 aa13.17□□□□□ -0.3
LSM4-206ENST00000600289 MUL1Q969V5 352 aa13.17□□□□□ -0.3
LSM4-206ENST00000600289 FOXRED1Q96CU9 486 aaPredicted RBP13.17□□□□□ -0.3
LSM4-206ENST00000600289 AJUBAQ96IF1 538 aa13.17□□□□□ -0.3
LSM4-206ENST00000600289 DUX5Q96PT3 197 aa13.17□□□□□ -0.3
LSM4-206ENST00000600289 GAL3ST2Q9H3Q3 398 aa13.17□□□□□ -0.3
LSM4-206ENST00000600289 TCF7L1Q9HCS4 588 aa13.17□□□□□ -0.3
LSM4-206ENST00000600289 GHRLQ9UBU3 117 aa13.17□□□□□ -0.3
LSM4-206ENST00000600289 FAM96BQ9Y3D0 163 aa13.17□□□□□ -0.3
LSM4-206ENST00000600289 TRGV10A0A0A0MS01 117 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 ODAMA1E959 279 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 MEIOCA2RUB1 952 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 HSMCR30P0CW71 290 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 SERPINA2P20848 420 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 GABRA5P31644 462 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 MAP2K4P45985 399 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 SCN1BQ07699 218 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 AESQ08117 197 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 AANATQ16613 207 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 HSD17B12Q53GQ0 312 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 PAN3Q58A45 887 aaKnown RBP13.16□□□□□ -0.3
LSM4-206ENST00000600289 KRBOX4Q5JUW0 171 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 ZNF626Q68DY1 528 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 AWAT2Q6E213 333 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 C16orf87Q6PH81 154 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 GLIPR1L1Q6UWM5 242 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 TMEM91Q6ZNR0 172 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 CEACAM19Q7Z692 300 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 PNKDQ8N490 385 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 OR4D6Q8NGJ1 314 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 NR1H4Q96RI1 486 aaPredicted RBP13.16□□□□□ -0.3
LSM4-206ENST00000600289 MEGF9Q9H1U4 602 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 DPAGT1Q9H3H5 408 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 TBL2Q9Y4P3 447 aaKnown RBP13.16□□□□□ -0.3
LSM4-206ENST00000600289 SESN1Q9Y6P5 492 aa13.16□□□□□ -0.3
LSM4-206ENST00000600289 FAM90A10PA6NDY2 464 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 FAM90A18PA6NE21 464 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 FAM90A16PA6NEW6 464 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 FAM90A20PA6NIJ5 464 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 FAM90A8PA6NJQ4 464 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 FAM90A7PA6NKC0 464 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 ZNF729A6NN14 1252 aaPredicted RBP13.15□□□□□ -0.3
LSM4-206ENST00000600289 FAM90A22PA8MWA6 464 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 FAM90A12PA8MX19 464 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 FAM90A5PA8MXJ8 464 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 FAM90A23PA8MXZ1 464 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 GEMIN2O14893 280 aaKnown RBP13.15□□□□□ -0.3
LSM4-206ENST00000600289 ARL6IP5O75915 188 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 FAM90A15PP0C7V4 464 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 FAM90A13PP0C7W8 464 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 FAM90A14PP0C7W9 464 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 FAM90A24PP0C7X0 464 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 UBBP0CG47 229 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 SRMP19623 302 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 GLIPR1P48060 266 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 RPS25P62851 125 aaKnown RBP13.15□□□□□ -0.3
LSM4-206ENST00000600289 EMX1Q04741 257 aaPredicted RBP13.15□□□□□ -0.3
LSM4-206ENST00000600289 ATXN7L3Q14CW9 347 aaPredicted RBP13.15□□□□□ -0.3
LSM4-206ENST00000600289 SLC22A6Q4U2R8 563 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 PRR31Q5SQ13 230 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 C1orf100Q5SVJ3 147 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 FAM27D1Q5T7N8 215 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 HEPN1Q6WQI6 88 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 ZNF782Q6ZMW2 699 aaPredicted RBP13.15□□□□□ -0.3
LSM4-206ENST00000600289 SVOPQ8N4V2 548 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 DYRK2Q92630 601 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 GCDHQ92947 438 aaPredicted RBP13.15□□□□□ -0.3
LSM4-206ENST00000600289 PPIL3Q9H2H8 161 aaKnown RBP13.15□□□□□ -0.3
LSM4-206ENST00000600289 SPACA1Q9HBV2 294 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 OR6C3Q9NZP0 311 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 RCC2Q9P258 522 aaKnown RBP13.15□□□□□ -0.3
LSM4-206ENST00000600289 KIAA2026Q5HYC2 2103 aa13.15□□□□□ -0.3
LSM4-206ENST00000600289 A0A1W2PP11 408 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 A0A1W2PRD5 423 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 A0A1W2PRF3 423 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 A0A1W2PRM7 423 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 OR7C1O76099 320 aaPredicted RBP13.14□□□□□ -0.31
LSM4-206ENST00000600289 PAHP00439 452 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 IGHV4-59P01825 116 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 CGB3P0DN86 165 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 CGB7P0DN87 165 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 FOXL1Q12952 345 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 UBE2UQ5VVX9 321 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 RSBN1Q5VWQ0 802 aaPredicted RBP13.14□□□□□ -0.31
LSM4-206ENST00000600289 GLT8D1Q68CQ7 371 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 OR52W1Q6IF63 320 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 TRAPPC6BQ86SZ2 158 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 SUMF2Q8NBJ7 301 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 OR5R1Q8NH85 324 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 DPCDQ9BVM2 203 aaPredicted RBP13.14□□□□□ -0.31
LSM4-206ENST00000600289 BARHL1Q9BZE3 327 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 CHIAQ9BZP6 476 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 SLITRK2Q9H156 845 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 TMEM133Q9H2Q1 129 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 LINC00574Q9H8X3 128 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 NDUFB11Q9NX14 153 aa13.14□□□□□ -0.31
LSM4-206ENST00000600289 A0A087X0M5 115 aa13.13□□□□□ -0.31
LSM4-206ENST00000600289 A0A1B0GX30 115 aa13.13□□□□□ -0.31
LSM4-206ENST00000600289 GALP22466 123 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms