RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 GLYATL2Q8WU03 294 aa12.28□□□□□ -0.44
VRK3-217ENST00000599538 ABHD17AQ96GS6 310 aa12.28□□□□□ -0.44
VRK3-217ENST00000599538 PLK3Q9H4B4 646 aa12.28□□□□□ -0.44
VRK3-217ENST00000599538 IGHV2OR16-5A0A0B4J2B6 119 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 KANTRA0A1W2PQU2 76 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 OR5H1A6NKK0 313 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 PRSS44E7EML9 344 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 SIRPB1O00241 398 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 RRASP10301 218 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 CEBPDP49716 269 aaPredicted RBP12.27□□□□□ -0.45
VRK3-217ENST00000599538 IL13RA2Q14627 380 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 OR8G1Q15617 311 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 MSMPQ1L6U9 139 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 IAH1Q2TAA2 248 aaPredicted RBP12.27□□□□□ -0.45
VRK3-217ENST00000599538 UNQ6126/PRO20091Q6UXV3 157 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 LYZL2Q7Z4W2 148 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 LDLRAD3Q86YD5 345 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 INO80EQ8NBZ0 244 aaPredicted RBP12.27□□□□□ -0.45
VRK3-217ENST00000599538 LHFPL5Q8TAF8 219 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 PIK3IP1Q96FE7 263 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 RSRP1Q9BUV0 290 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 ZNF471Q9BX82 626 aaPredicted RBP12.27□□□□□ -0.45
VRK3-217ENST00000599538 MSL2Q9HCI7 577 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 OBP2BQ9NPH6 170 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 RASL12Q9NYN1 266 aa12.27□□□□□ -0.45
VRK3-217ENST00000599538 PURGQ9UJV8 347 aaKnown RBP12.27□□□□□ -0.45
VRK3-217ENST00000599538 TRDCB7Z8K6 153 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 PROB1E7EW31 1015 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 DEGS1O15121 323 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 OR2H2O95918 312 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 EIF2S3P41091 472 aaKnown RBP12.26□□□□□ -0.45
VRK3-217ENST00000599538 UCP3P55916 312 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 HERV-K104P61576 105 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 PCSK4Q6UW60 755 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 C11orf53Q8IXP5 236 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 OR1S1Q8NH92 325 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 PLPPR1Q8TBJ4 325 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 GALNT14Q96FL9 552 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 TP53RKQ96S44 253 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 NRIP2Q9BQI9 281 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 SCNM1Q9BWG6 230 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 SLC25A15Q9Y619 301 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 ATP23Q9Y6H3 246 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 WNT9BO14905 357 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 SLC34A2O95436 690 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 TFF1P04155 84 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 PGA5P0DJD9 388 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 ZNF250P15622 560 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 KCNJ3P48549 501 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 S100A10P60903 97 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 P2RY6Q15077 328 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 TOR2AQ5JU69 321 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 RGS7BPQ6MZT1 257 aaPredicted RBP12.26□□□□□ -0.45
VRK3-217ENST00000599538 PRSS54Q6PEW0 395 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 LINC00596Q86U02 117 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 SLC38A6Q8IZM9 456 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 OR8G5Q8NG78 346 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 UBALD1Q8TB05 177 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 SECTM1Q8WVN6 248 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 MSI2Q96DH6 328 aaKnown RBP12.26□□□□□ -0.45
VRK3-217ENST00000599538 KIF25Q9UIL4 384 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 WASF3Q9UPY6 502 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 TP53TG5Q9Y2B4 290 aa12.26□□□□□ -0.45
VRK3-217ENST00000599538 ICE1Q9Y2F5 2266 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 SLC33A1O00400 549 aaPredicted RBP12.25□□□□□ -0.45
VRK3-217ENST00000599538 TPD52L2O43399 206 aaKnown RBP12.25□□□□□ -0.45
VRK3-217ENST00000599538 NXPH2O95156 264 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 LYL1P12980 280 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 SRSF7Q16629 238 aaKnown RBP eCLIP12.25□□□□□ -0.45
VRK3-217ENST00000599538 C1orf185Q5T7R7 199 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 PRAMEF6Q5VXH4 476 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 ZNF818PQ6ZRF7 136 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 BEND4Q6ZU67 534 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 S100PBPQ96BU1 408 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 SPACA1Q9HBV2 294 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 TMEM100Q9NV29 134 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 KCNIP3Q9Y2W7 256 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 CHD3Q12873 2000 aaKnown RBP12.25□□□□□ -0.45
VRK3-217ENST00000599538 PCNX1Q96RV3 2341 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 F5H0A9 414 aaPredicted RBP12.25□□□□□ -0.45
VRK3-217ENST00000599538 PHF1O43189 567 aaPredicted RBP12.25□□□□□ -0.45
VRK3-217ENST00000599538 TK1P04183 234 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 ZNF83P51522 516 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 UBA52P62987 128 aaKnown RBP12.25□□□□□ -0.45
VRK3-217ENST00000599538 AANATQ16613 207 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 C22orf34Q6ZV56 151 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 REG4Q9BYZ8 158 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 POLDIP2Q9Y2S7 368 aa12.25□□□□□ -0.45
VRK3-217ENST00000599538 MKRN2OSH3BPM6 223 aa12.24□□□□□ -0.45
VRK3-217ENST00000599538 TIMM8AO60220 97 aaPredicted RBP12.24□□□□□ -0.45
VRK3-217ENST00000599538 TUSC2O75896 110 aa12.24□□□□□ -0.45
VRK3-217ENST00000599538 P2RX3P56373 397 aa12.24□□□□□ -0.45
VRK3-217ENST00000599538 PAN3Q58A45 887 aaKnown RBP12.24□□□□□ -0.45
VRK3-217ENST00000599538 ZNF880Q6PDB4 577 aa12.24□□□□□ -0.45
VRK3-217ENST00000599538 LIAT1Q6ZQX7 453 aa12.24□□□□□ -0.45
VRK3-217ENST00000599538 LRP11Q86VZ4 500 aa12.24□□□□□ -0.45
VRK3-217ENST00000599538 SPACA3Q8IXA5 215 aa12.24□□□□□ -0.45
VRK3-217ENST00000599538 GTF3AQ92664 365 aaKnown RBP12.24□□□□□ -0.45
VRK3-217ENST00000599538 IFT22Q9H7X7 185 aa12.24□□□□□ -0.45
VRK3-217ENST00000599538 CCL28Q9NRJ3 127 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms