RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 LOC100130705A0A1B0GUX0 176 aa16.71■□□□□ 0.27
VPS53-216ENST00000574029 PSMB11A5LHX3 300 aa16.71■□□□□ 0.27
VPS53-216ENST00000574029 CASQ2O14958 399 aaPredicted RBP16.71■□□□□ 0.27
VPS53-216ENST00000574029 OCM2P0CE71 109 aa16.71■□□□□ 0.27
VPS53-216ENST00000574029 OCMP0CE72 109 aaPredicted RBP16.71■□□□□ 0.27
VPS53-216ENST00000574029 FAM106CPP0CH98 169 aa16.71■□□□□ 0.27
VPS53-216ENST00000574029 CGB3P0DN86 165 aa16.71■□□□□ 0.27
VPS53-216ENST00000574029 CGB7P0DN87 165 aa16.71■□□□□ 0.27
VPS53-216ENST00000574029 GABRB1P18505 474 aa16.71■□□□□ 0.27
VPS53-216ENST00000574029 HOXD3P31249 432 aaPredicted RBP16.71■□□□□ 0.27
VPS53-216ENST00000574029 RBM39Q14498 530 aaKnown RBP16.71■□□□□ 0.27
VPS53-216ENST00000574029 CDK5R1Q15078 307 aa16.71■□□□□ 0.27
VPS53-216ENST00000574029 MRPL41Q8IXM3 137 aaKnown RBP16.71■□□□□ 0.27
VPS53-216ENST00000574029 OR51A4Q8NGJ6 313 aa16.71■□□□□ 0.27
VPS53-216ENST00000574029 OR13C9Q8NGT0 318 aa16.71■□□□□ 0.27
VPS53-216ENST00000574029 OR9G1Q8NH87 305 aa16.71■□□□□ 0.27
VPS53-216ENST00000574029 KIRREL1Q96J84 757 aa16.71■□□□□ 0.27
VPS53-216ENST00000574029 GPR61Q9BZJ8 451 aa16.71■□□□□ 0.27
VPS53-216ENST00000574029 PPIL3Q9H2H8 161 aaKnown RBP16.71■□□□□ 0.27
VPS53-216ENST00000574029 DCLRE1BQ9H816 532 aa16.71■□□□□ 0.27
VPS53-216ENST00000574029 PCDHB16Q9NRJ7 776 aa16.71■□□□□ 0.27
VPS53-216ENST00000574029 ING3Q9NXR8 418 aa16.71■□□□□ 0.27
VPS53-216ENST00000574029 SMPD3Q9NY59 655 aaPredicted RBP16.71■□□□□ 0.27
VPS53-216ENST00000574029 OR6C3Q9NZP0 311 aa16.71■□□□□ 0.27
VPS53-216ENST00000574029 COL7A1Q02388 2944 aa16.7■□□□□ 0.26
VPS53-216ENST00000574029 KBTBD11-OT1A0A1B0GTJ5 212 aa16.7■□□□□ 0.26
VPS53-216ENST00000574029 DEGS1O15121 323 aa16.7■□□□□ 0.26
VPS53-216ENST00000574029 MPZL2O60487 215 aa16.7■□□□□ 0.26
VPS53-216ENST00000574029 HTR1AP08908 422 aa16.7■□□□□ 0.26
VPS53-216ENST00000574029 ATXN7L3Q14CW9 347 aaPredicted RBP16.7■□□□□ 0.26
VPS53-216ENST00000574029 LPCAT4Q643R3 524 aa16.7■□□□□ 0.26
VPS53-216ENST00000574029 OR51D1Q8NGF3 324 aa16.7■□□□□ 0.26
VPS53-216ENST00000574029 OR13C3Q8NGS6 347 aa16.7■□□□□ 0.26
VPS53-216ENST00000574029 RHOXF1Q8NHV9 184 aa16.7■□□□□ 0.26
VPS53-216ENST00000574029 NEK6Q9HC98 313 aa16.7■□□□□ 0.26
VPS53-216ENST00000574029 DAPL1A0PJW8 107 aa16.69■□□□□ 0.26
VPS53-216ENST00000574029 OR4C45A6NMZ5 311 aa16.69■□□□□ 0.26
VPS53-216ENST00000574029 NFYBP25208 207 aa16.69■□□□□ 0.26
VPS53-216ENST00000574029 THBS3P49746 956 aa16.69■□□□□ 0.26
VPS53-216ENST00000574029 ZP1P60852 638 aa16.69■□□□□ 0.26
VPS53-216ENST00000574029 OGFRL1Q5TC84 451 aaPredicted RBP16.69■□□□□ 0.26
VPS53-216ENST00000574029 OR51T1Q8NGJ9 327 aa16.69■□□□□ 0.26
VPS53-216ENST00000574029 TOMM40LQ969M1 308 aa16.69■□□□□ 0.26
VPS53-216ENST00000574029 RPEQ96AT9 228 aa16.69■□□□□ 0.26
VPS53-216ENST00000574029 ZCCHC4Q9H5U6 513 aa16.69■□□□□ 0.26
VPS53-216ENST00000574029 MYRFQ9Y2G1 1151 aa16.69■□□□□ 0.26
VPS53-216ENST00000574029 AMMECR1Q9Y4X0 333 aaPredicted RBP16.69■□□□□ 0.26
VPS53-216ENST00000574029 ERICH4A6NGS2 130 aa16.68■□□□□ 0.26
VPS53-216ENST00000574029 J3QR06 171 aa16.68■□□□□ 0.26
VPS53-216ENST00000574029 SNRNP70P08621 437 aaKnown RBP16.68■□□□□ 0.26
VPS53-216ENST00000574029 RPL23AP62750 156 aaKnown RBP16.68■□□□□ 0.26
VPS53-216ENST00000574029 LRRC36Q1X8D7 754 aa16.68■□□□□ 0.26
VPS53-216ENST00000574029 ZNF329Q86UD4 541 aa16.68■□□□□ 0.26
VPS53-216ENST00000574029 ZNF555Q8NEP9 628 aa16.68■□□□□ 0.26
VPS53-216ENST00000574029 DPF1Q92782 380 aa16.68■□□□□ 0.26
VPS53-216ENST00000574029 RNFT2Q96EX2 444 aa16.68■□□□□ 0.26
VPS53-216ENST00000574029 PELI1Q96FA3 418 aa16.68■□□□□ 0.26
VPS53-216ENST00000574029 B9D2Q9BPU9 175 aa16.68■□□□□ 0.26
VPS53-216ENST00000574029 ZNF649Q9BS31 505 aa16.68■□□□□ 0.26
VPS53-216ENST00000574029 NCOR1P1Q9H4R4 102 aa16.68■□□□□ 0.26
VPS53-216ENST00000574029 LINC00574Q9H8X3 128 aa16.68■□□□□ 0.26
VPS53-216ENST00000574029 A0A1W2PPI3 338 aa16.67■□□□□ 0.26
VPS53-216ENST00000574029 SNTNA6NMZ2 147 aa16.67■□□□□ 0.26
VPS53-216ENST00000574029 TMEM225BP0DP42 221 aa16.67■□□□□ 0.26
VPS53-216ENST00000574029 DBTP11182 482 aaKnown RBP16.67■□□□□ 0.26
VPS53-216ENST00000574029 MTNR1BP49286 362 aa16.67■□□□□ 0.26
VPS53-216ENST00000574029 ALKBH1Q13686 389 aaKnown RBP16.67■□□□□ 0.26
VPS53-216ENST00000574029 C5orf56Q8N8D9 126 aa16.67■□□□□ 0.26
VPS53-216ENST00000574029 ZNF565Q8N9K5 539 aa16.67■□□□□ 0.26
VPS53-216ENST00000574029 OR56B4Q8NH76 319 aa16.67■□□□□ 0.26
VPS53-216ENST00000574029 CHPT1Q8WUD6 406 aa16.67■□□□□ 0.26
VPS53-216ENST00000574029 Q96MT0 163 aa16.67■□□□□ 0.26
VPS53-216ENST00000574029 MCRIP2Q9BUT9 160 aaKnown RBP16.67■□□□□ 0.26
VPS53-216ENST00000574029 CALYQ9NYX4 217 aa16.67■□□□□ 0.26
VPS53-216ENST00000574029 KMT2CQ8NEZ4 4911 aaKnown RBP16.67■□□□□ 0.26
VPS53-216ENST00000574029 H0YJX3 145 aa16.66■□□□□ 0.26
VPS53-216ENST00000574029 J3QLW9 94 aa16.66■□□□□ 0.26
VPS53-216ENST00000574029 ZNF19P17023 458 aa16.66■□□□□ 0.26
VPS53-216ENST00000574029 SLC6A1P30531 599 aa16.66■□□□□ 0.26
VPS53-216ENST00000574029 CD69Q07108 199 aa16.66■□□□□ 0.26
VPS53-216ENST00000574029 KISS1Q15726 138 aa16.66■□□□□ 0.26
VPS53-216ENST00000574029 ELP2Q6IA86 826 aa16.66■□□□□ 0.26
VPS53-216ENST00000574029 C18orf65Q6ZTR6 163 aa16.66■□□□□ 0.26
VPS53-216ENST00000574029 OR2W3Q7Z3T1 314 aa16.66■□□□□ 0.26
VPS53-216ENST00000574029 DRAM1Q8N682 238 aa16.66■□□□□ 0.26
VPS53-216ENST00000574029 OR13A1Q8NGR1 328 aa16.66■□□□□ 0.26
VPS53-216ENST00000574029 C4orf36Q96KX1 117 aa16.66■□□□□ 0.26
VPS53-216ENST00000574029 NOL4LQ96MY1 436 aaPredicted RBP16.66■□□□□ 0.26
VPS53-216ENST00000574029 ZFP57Q9NU63 452 aa16.66■□□□□ 0.26
VPS53-216ENST00000574029 IDI2-AS1Q9NZ38 188 aa16.66■□□□□ 0.26
VPS53-216ENST00000574029 KIF25Q9UIL4 384 aa16.66■□□□□ 0.26
VPS53-216ENST00000574029 EXOGQ9Y2C4 368 aaKnown RBP16.66■□□□□ 0.26
VPS53-216ENST00000574029 NPIPB11E5RHQ5 1161 aa16.65■□□□□ 0.26
VPS53-216ENST00000574029 FGF16O43320 207 aa16.65■□□□□ 0.26
VPS53-216ENST00000574029 HCKP08631 526 aa16.65■□□□□ 0.26
VPS53-216ENST00000574029 TMEM11P17152 192 aa16.65■□□□□ 0.26
VPS53-216ENST00000574029 C21orf33P30042 268 aaPredicted RBP16.65■□□□□ 0.26
VPS53-216ENST00000574029 MYCNOSP40205 109 aa16.65■□□□□ 0.26
VPS53-216ENST00000574029 GLP1RP43220 463 aa16.65■□□□□ 0.26
VPS53-216ENST00000574029 DIAPH2-AS1Q14236 149 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 144.7 ms