RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 POLR2IP36954 125 aaKnown RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 MAP2K3P46734 347 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 ERVK11-1P61568 191 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 RRAS2P62070 204 aaPredicted RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 PPP3R1P63098 170 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 HABP2Q14520 560 aaPredicted RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 AANATQ16613 207 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 ZIK1Q3SY52 487 aaPredicted RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 PXDC1Q5TGL8 231 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 DEGS2Q6QHC5 323 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 Q6ZPA2 131 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 Q6ZS46 218 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 MOB3CQ70IA8 216 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 TCF23Q7RTU1 214 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 BCDIN3DQ7Z5W3 292 aaKnown RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 NRARPQ7Z6K4 114 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 KRT77Q7Z794 578 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 COMMD7Q86VX2 200 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 CALHM1Q8IU99 346 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 CDH26Q8IXH8 852 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 ZNF679Q8IYX0 411 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 FAM185AQ8N0U4 392 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 BATF2Q8N1L9 274 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 Q8N2B8 174 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 KLHDC1Q8N7A1 406 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 DUSP18Q8NEJ0 188 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 OR4M1Q8NGD0 313 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 OR5D13Q8NGL4 314 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 OR14K1Q8NGZ2 314 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 ZNF431Q8TF32 576 aaPredicted RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 RBPMSQ93062 196 aaKnown RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 Q96MT0 163 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 NRIP2Q9BQI9 281 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 TTTY10Q9BZA0 68 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 ZNF436Q9C0F3 470 aaPredicted RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 BIN3Q9NQY0 253 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 RASL12Q9NYN1 266 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 CNOT2Q9NZN8 540 aaKnown RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 NUFIP1Q9UHK0 495 aaKnown RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 LAMP5Q9UJQ1 280 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 ELF5Q9UKW6 265 aaPredicted RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 SSR3Q9UNL2 185 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 DIMT1Q9UNQ2 313 aaKnown RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 PIGLQ9Y2B2 252 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 V9GYS6 101 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 IGKV1-27A0A075B6S5 117 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 A6NDX4 124 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 ANKRD61A6NGH8 418 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 A6NIN4 97 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 C17orf98A8MV24 154 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 F8W036 122 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 J3QT63 122 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 M0R129 80 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 PRKYO43930 277 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 SSX5O60225 188 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 ZNF737O75373 536 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 DHRS3O75911 302 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 CLIC3O95833 236 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 FADS2O95864 444 aaKnown RBP5.42□□□□□ -1.54
VPS53-213ENST00000572334 TK1P04183 234 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 EPHA2P29317 976 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 PRDX2P32119 198 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 HAAOP46952 286 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 RAB13P51153 203 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 DAPP51397 102 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 NCS1P62166 190 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 LSM3P62310 102 aaKnown RBP5.42□□□□□ -1.54
VPS53-213ENST00000572334 RPL31P62899 125 aaKnown RBP5.42□□□□□ -1.54
VPS53-213ENST00000572334 CD83Q01151 205 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 FBLN7Q53RD9 439 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 HES5Q5TA89 166 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 PLCXD3Q63HM9 321 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 FAHD1Q6P587 224 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 Q6ZTK2 550 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 SSX6Q7RTT6 188 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 ANGPTL5Q86XS5 388 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 LYG1Q8N1E2 194 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 ARL6IP6Q8N6S5 226 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 YIPF7Q8N8F6 280 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 CLRN3Q8NCR9 226 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 ZNF680Q8NEM1 530 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 OR51G2Q8NGK0 314 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 ZNF671Q8TAW3 534 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 HIST1H2AAQ96QV6 131 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 WNT10AQ9GZT5 417 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 MED28Q9H204 178 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 ADGRL4Q9HBW9 690 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 RANGRFQ9HD47 186 aaPredicted RBP5.42□□□□□ -1.54
VPS53-213ENST00000572334 GPR173Q9NS66 373 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 RBFOX1Q9NWB1 397 aaKnown RBP5.42□□□□□ -1.54
VPS53-213ENST00000572334 RDH8Q9NYR8 311 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 TVP23BQ9NYZ1 205 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 MRM2Q9UI43 246 aaKnown RBP5.42□□□□□ -1.54
VPS53-213ENST00000572334 GSTK1Q9Y2Q3 226 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 NBEAL2Q6ZNJ1 2754 aa5.42□□□□□ -1.54
VPS53-213ENST00000572334 TMEM82A0PJX8 343 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 MEX3AA1L020 520 aaKnown RBP5.41□□□□□ -1.54
VPS53-213ENST00000572334 FABP12A6NFH5 140 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 ZNF98A6NK75 572 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms