RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 CDS2O95674 445 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 CRYBA1P05813 215 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 SEC11BP0C7V7 166 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 CT45A10P0DMU9 189 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 SOX15O60248 233 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 PGA4P0DJD7 388 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 SULT1A1P50225 295 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 SUMO1P63165 101 aaKnown RBP13.44□□□□□ -0.26
CIITA-204ENST00000570546 TIMD4Q96H15 378 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 CXXC4Q9H2H0 198 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 WDR54Q9H977 334 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 SHISA7A6NL88 538 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 GNG10P50151 68 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 KRTDAPP60985 99 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 PNRC1Q12796 327 aaPredicted RBP13.43□□□□□ -0.26
CIITA-204ENST00000570546 ZNF362Q5T0B9 420 aaPredicted RBP13.43□□□□□ -0.26
CIITA-204ENST00000570546 DHRS13Q6UX07 377 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 ZNF519Q8TB69 540 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 USB1Q9BQ65 265 aaKnown RBP13.43□□□□□ -0.26
CIITA-204ENST00000570546 GNB4Q9HAV0 340 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 KIAA1456Q9P272 454 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 TRAV17A0A0B4J275 112 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 ZNF83P51522 516 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 H2BFSP57053 126 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 MPV17LQ2QL34 196 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 LRFN3Q9BTN0 628 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 CHRDL1Q9BU40 450 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 A0A0U1RQV5 110 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 TMEM11P17152 192 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 DLK1P80370 383 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 Q5BKY6 102 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 NCMAPQ5T1S8 102 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 MYPOPQ86VE0 399 aaPredicted RBP13.43□□□□□ -0.26
CIITA-204ENST00000570546 C17orf78Q8N4C9 275 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 IER2Q9BTL4 223 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 NPDC1Q9NQX5 325 aaPredicted RBP13.43□□□□□ -0.26
CIITA-204ENST00000570546 NAT8Q9UHE5 227 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 F12P00748 615 aaPredicted RBP13.43□□□□□ -0.26
CIITA-204ENST00000570546 HRASP01112 189 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 FCGR3AP08637 254 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 PMELP40967 661 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 TMEM50BP56557 158 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 ETV3LQ6ZN32 361 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 ZNF835Q9Y2P0 537 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 MAGEA5P43359 124 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 KIR2DS2P43631 304 aa13.43□□□□□ -0.26
CIITA-204ENST00000570546 DUSP15Q9H1R2 295 aaPredicted RBP13.43□□□□□ -0.26
CIITA-204ENST00000570546 A0A1W2PP11 408 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 MS4A18H0YCH9 400 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 IL9P15248 144 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 C3AR1Q16581 482 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 MS4A18Q3C1V0 323 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 SLC7A10Q9NS82 523 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 GPR132Q9UNW8 380 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 ST8SIA5O15466 376 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 CHRNA7P36544 502 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 RAB7AP51149 207 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 TEX30Q5JUR7 227 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 LYG1Q8N1E2 194 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 SLC24A4Q8NFF2 622 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 SMOC1Q9H4F8 434 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 OPN1MWP04001 364 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 FGF2P09038 288 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 OPN1MW2P0DN77 364 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 OPN1MW3P0DN78 364 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 NEIL1Q96FI4 390 aaPredicted RBP13.42□□□□□ -0.26
CIITA-204ENST00000570546 DNPH1O43598 174 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 BMP5P22003 454 aa13.42□□□□□ -0.26
CIITA-204ENST00000570546 RBM11P57052 281 aaKnown RBP13.42□□□□□ -0.26
CIITA-204ENST00000570546 GUCA2BQ16661 112 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 FAM162BQ5T6X4 162 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 MANBALQ9NQG1 85 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 FAM206AQ9NX38 181 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 OR2W1Q9Y3N9 320 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 SEC14L6B5MCN3 397 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 SEMA7AO75326 666 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 MUC1P15941 1255 aaPredicted RBP13.41□□□□□ -0.26
CIITA-204ENST00000570546 HLA-GP17693 338 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 ERVS71-1P61550 626 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 IGLV3-21P80748 117 aaPredicted RBP13.41□□□□□ -0.26
CIITA-204ENST00000570546 IQCJQ1A5X6 159 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 NAT1P18440 290 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 NHLRC3Q5JS37 347 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 FAM27BQ5VT28 67 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 SLC25A47Q6Q0C1 308 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 CNTRLQ7Z7A1 2325 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 H3BQ15 152 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 SIGLEC5O15389 551 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 DEDDO75618 318 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 HAND1O96004 215 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 FAM3AP98173 230 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 SIGLEC14Q08ET2 396 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 STUMQ69YW2 141 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 NRIP2Q9BQI9 281 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 AICDAQ9GZX7 198 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 G6PC2Q9NQR9 355 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 ANKRD36A6QL64 1941 aa13.41□□□□□ -0.26
CIITA-204ENST00000570546 OOEPA6NGQ2 149 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 FOSL1P15407 271 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 RANP62826 216 aaKnown RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms