RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 CD28P10747 220 aa18.03■□□□□ 0.48
CLN3-215ENST00000565236 MYL12AP19105 171 aa18.03■□□□□ 0.48
CLN3-215ENST00000565236 CD24P25063 80 aa18.03■□□□□ 0.48
CLN3-215ENST00000565236 EMX1Q04741 257 aaPredicted RBP18.03■□□□□ 0.48
CLN3-215ENST00000565236 LRRC36Q1X8D7 754 aa18.03■□□□□ 0.48
CLN3-215ENST00000565236 C17orf58Q2M2W7 97 aa18.03■□□□□ 0.48
CLN3-215ENST00000565236 Q6ZS46 218 aa18.03■□□□□ 0.48
CLN3-215ENST00000565236 LYG1Q8N1E2 194 aa18.03■□□□□ 0.48
CLN3-215ENST00000565236 CAPSLQ8WWF8 208 aa18.03■□□□□ 0.48
CLN3-215ENST00000565236 CYGBQ8WWM9 190 aa18.03■□□□□ 0.48
CLN3-215ENST00000565236 AKR1E2Q96JD6 320 aa18.03■□□□□ 0.48
CLN3-215ENST00000565236 BABAM2Q9NXR7 383 aa18.03■□□□□ 0.48
CLN3-215ENST00000565236 MEIKINA0A087WXM9 373 aa18.02■□□□□ 0.48
CLN3-215ENST00000565236 TRAV24A0A0B4J272 114 aa18.02■□□□□ 0.48
CLN3-215ENST00000565236 KBTBD11-OT1A0A1B0GTJ5 212 aa18.02■□□□□ 0.48
CLN3-215ENST00000565236 HTR3BO95264 441 aa18.02■□□□□ 0.48
CLN3-215ENST00000565236 CLIC3O95833 236 aa18.02■□□□□ 0.48
CLN3-215ENST00000565236 NFYBP25208 207 aa18.02■□□□□ 0.48
CLN3-215ENST00000565236 VDAC2P45880 294 aaPredicted RBP18.02■□□□□ 0.48
CLN3-215ENST00000565236 PPP3R1P63098 170 aa18.02■□□□□ 0.48
CLN3-215ENST00000565236 IL13RA2Q14627 380 aa18.02■□□□□ 0.48
CLN3-215ENST00000565236 NSUN5P1Q3KNT7 163 aa18.02■□□□□ 0.48
CLN3-215ENST00000565236 TTC23Q5W5X9 447 aa18.02■□□□□ 0.48
CLN3-215ENST00000565236 C16orf82Q7Z2V1 217 aa18.02■□□□□ 0.48
CLN3-215ENST00000565236 OR10K1Q8NGX5 313 aa18.02■□□□□ 0.48
CLN3-215ENST00000565236 TMEM138Q9NPI0 162 aa18.02■□□□□ 0.48
CLN3-215ENST00000565236 CHCHD3Q9NX63 227 aaKnown RBP18.02■□□□□ 0.48
CLN3-215ENST00000565236 KIF25Q9UIL4 384 aa18.02■□□□□ 0.48
CLN3-215ENST00000565236 ZNF281Q9Y2X9 895 aa18.02■□□□□ 0.48
CLN3-215ENST00000565236 EXOSC1Q9Y3B2 195 aaKnown RBP18.02■□□□□ 0.48
CLN3-215ENST00000565236 A0A087X0M5 115 aa18.01■□□□□ 0.47
CLN3-215ENST00000565236 A0A1B0GX30 115 aa18.01■□□□□ 0.47
CLN3-215ENST00000565236 BUB1B-PAK6H3BSN5 160 aa18.01■□□□□ 0.47
CLN3-215ENST00000565236 OGG1O15527 345 aa18.01■□□□□ 0.47
CLN3-215ENST00000565236 C21orf33P30042 268 aaPredicted RBP18.01■□□□□ 0.47
CLN3-215ENST00000565236 GLP1RP43220 463 aa18.01■□□□□ 0.47
CLN3-215ENST00000565236 MED21Q13503 144 aa18.01■□□□□ 0.47
CLN3-215ENST00000565236 RBM39Q14498 530 aaKnown RBP18.01■□□□□ 0.47
CLN3-215ENST00000565236 HLA-DRB5Q30154 266 aa18.01■□□□□ 0.47
CLN3-215ENST00000565236 ASCL4Q6XD76 172 aa18.01■□□□□ 0.47
CLN3-215ENST00000565236 Q8NFD4 153 aa18.01■□□□□ 0.47
CLN3-215ENST00000565236 WNT10AQ9GZT5 417 aa18.01■□□□□ 0.47
CLN3-215ENST00000565236 NCOR1P1Q9H4R4 102 aa18.01■□□□□ 0.47
CLN3-215ENST00000565236 LIN7BQ9HAP6 207 aa18.01■□□□□ 0.47
CLN3-215ENST00000565236 ING4Q9UNL4 249 aa18.01■□□□□ 0.47
CLN3-215ENST00000565236 DIMT1Q9UNQ2 313 aaKnown RBP18.01■□□□□ 0.47
CLN3-215ENST00000565236 SIRT4Q9Y6E7 314 aaPredicted RBP18.01■□□□□ 0.47
CLN3-215ENST00000565236 CDRT1O95170 752 aa18■□□□□ 0.47
CLN3-215ENST00000565236 CGB3P0DN86 165 aa18■□□□□ 0.47
CLN3-215ENST00000565236 CGB7P0DN87 165 aa18■□□□□ 0.47
CLN3-215ENST00000565236 OR3A4PP47883 348 aa18■□□□□ 0.47
CLN3-215ENST00000565236 PIGYQ3MUY2 71 aa18■□□□□ 0.47
CLN3-215ENST00000565236 TPTE2P1Q5T6R2 138 aa18■□□□□ 0.47
CLN3-215ENST00000565236 SETD9Q8NE22 299 aa18■□□□□ 0.47
CLN3-215ENST00000565236 OR9G1Q8NH87 305 aa18■□□□□ 0.47
CLN3-215ENST00000565236 SMIM19Q96E16 107 aa18■□□□□ 0.47
CLN3-215ENST00000565236 TMEM80Q96HE8 168 aa18■□□□□ 0.47
CLN3-215ENST00000565236 KIRREL1Q96J84 757 aa18■□□□□ 0.47
CLN3-215ENST00000565236 S100A13Q99584 98 aa18■□□□□ 0.47
CLN3-215ENST00000565236 METTL9Q9H1A3 318 aa18■□□□□ 0.47
CLN3-215ENST00000565236 C8orf4Q9NR00 106 aa18■□□□□ 0.47
CLN3-215ENST00000565236 CALYQ9NYX4 217 aa18■□□□□ 0.47
CLN3-215ENST00000565236 CLEC2DQ9UHP7 191 aa18■□□□□ 0.47
CLN3-215ENST00000565236 CSTBP04080 98 aaKnown RBP17.99■□□□□ 0.47
CLN3-215ENST00000565236 ZNF93P35789 620 aaPredicted RBP17.99■□□□□ 0.47
CLN3-215ENST00000565236 MNDAP41218 407 aa17.99■□□□□ 0.47
CLN3-215ENST00000565236 KCNJ3P48549 501 aa17.99■□□□□ 0.47
CLN3-215ENST00000565236 DDI2Q5TDH0 399 aa17.99■□□□□ 0.47
CLN3-215ENST00000565236 CCDC144NLQ6NUI1 221 aa17.99■□□□□ 0.47
CLN3-215ENST00000565236 NDUFA11Q86Y39 141 aa17.99■□□□□ 0.47
CLN3-215ENST00000565236 DHRSXQ8N5I4 330 aa17.99■□□□□ 0.47
CLN3-215ENST00000565236 OR13A1Q8NGR1 328 aa17.99■□□□□ 0.47
CLN3-215ENST00000565236 WIPF2Q8TF74 440 aaPredicted RBP17.99■□□□□ 0.47
CLN3-215ENST00000565236 CITED2Q99967 270 aaPredicted RBP17.99■□□□□ 0.47
CLN3-215ENST00000565236 OCSTAMPQ9BR26 566 aa17.99■□□□□ 0.47
CLN3-215ENST00000565236 ST3GAL6Q9Y274 331 aa17.99■□□□□ 0.47
CLN3-215ENST00000565236 PLXNB1O43157 2135 aa17.98■□□□□ 0.47
CLN3-215ENST00000565236 OOSP1A8MZH6 123 aa17.98■□□□□ 0.47
CLN3-215ENST00000565236 LY6LH3BQJ8 138 aa17.98■□□□□ 0.47
CLN3-215ENST00000565236 BDKRB2P30411 391 aa17.98■□□□□ 0.47
CLN3-215ENST00000565236 TMEM95Q3KNT9 176 aa17.98■□□□□ 0.47
CLN3-215ENST00000565236 UTF1Q5T230 341 aa17.98■□□□□ 0.47
CLN3-215ENST00000565236 OSR2Q8N2R0 312 aa17.98■□□□□ 0.47
CLN3-215ENST00000565236 PACRGLQ8N7B6 248 aa17.98■□□□□ 0.47
CLN3-215ENST00000565236 GHSRQ92847 366 aa17.98■□□□□ 0.47
CLN3-215ENST00000565236 SLC25A33Q9BSK2 321 aa17.98■□□□□ 0.47
CLN3-215ENST00000565236 MMP28Q9H239 520 aa17.98■□□□□ 0.47
CLN3-215ENST00000565236 PAK1IP1Q9NWT1 392 aaPredicted RBP17.98■□□□□ 0.47
CLN3-215ENST00000565236 IDI2-AS1Q9NZ38 188 aa17.98■□□□□ 0.47
CLN3-215ENST00000565236 G3V4G9 280 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 OR2F2O95006 317 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 LALBAP00709 142 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 IL1AP01583 271 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 PAX5Q02548 391 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 RSBN1Q5VWQ0 802 aaPredicted RBP17.97■□□□□ 0.47
CLN3-215ENST00000565236 SUMF2Q8NBJ7 301 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 OR4F17Q8NGA8 305 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 OR5AU1Q8NGC0 362 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 OR13C5Q8NGS8 318 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 OR52N1Q8NH53 320 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms