RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 DEGS2Q6QHC5 323 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 EPGNQ6UW88 154 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 ALKAL1Q6UXT8 129 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 CLEC20AQ6ZU45 233 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 C10orf107Q8IVU9 208 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 DEFB107AQ8IZN7 70 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 ZNF567Q8N184 647 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 TRAM1L1Q8N609 369 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 PACRGLQ8N7B6 248 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 C12orf29Q8N999 325 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 CIRBP-AS1Q8TBR5 109 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 FAM45AQ8TCE6 357 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 PIH1D2Q8WWB5 315 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 ISOC2Q96AB3 205 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 CCDC124Q96CT7 223 aaKnown RBP2.74□□□□□ -1.97
LINC00560-201ENST00000564593 SCGB3A2Q96PL1 93 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 ACBD6Q9BR61 282 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 RSG1Q9BU20 258 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 KIFC1Q9BW19 673 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 OSBPL11Q9BXB4 747 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 MRPS26Q9BYN8 205 aaKnown RBP2.74□□□□□ -1.97
LINC00560-201ENST00000564593 GID8Q9NWU2 228 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 PSMD13Q9UNM6 376 aa2.74□□□□□ -1.97
LINC00560-201ENST00000564593 NYNRINQ9P2P1 1898 aaKnown RBP2.74□□□□□ -1.97
LINC00560-201ENST00000564593 DOCK3Q8IZD9 2030 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 ZNF99A8MXY4 864 aaPredicted RBP2.73□□□□□ -1.97
LINC00560-201ENST00000564593 KCNK1O00180 336 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 DFFAO00273 331 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 TXNDC9O14530 226 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 POLR1CO15160 346 aaPredicted RBP2.73□□□□□ -1.97
LINC00560-201ENST00000564593 RRP8O43159 456 aaKnown RBP2.73□□□□□ -1.97
LINC00560-201ENST00000564593 RAD1O60671 282 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 C1QAP02745 245 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 TACSTD2P09758 323 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 IDO1P14902 403 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 OGNP20774 298 aaKnown RBP2.73□□□□□ -1.97
LINC00560-201ENST00000564593 CD70P32970 193 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 GGT2P36268 569 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 PMELP40967 661 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 RPL5P46777 297 aaKnown RBP2.73□□□□□ -1.97
LINC00560-201ENST00000564593 MAP3K7CLP57077 242 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 ATP6V0D1P61421 351 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 MOBPQ13875 183 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 ZNF235Q14590 738 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 MFSD14CQ5VZR4 134 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 ZNF470Q6ECI4 717 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 MRPL21Q7Z2W9 205 aaKnown RBP2.73□□□□□ -1.97
LINC00560-201ENST00000564593 COMTD1Q86VU5 262 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 STK40Q8N2I9 435 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 ZNF709Q8N972 641 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 NECAP1Q8NC96 275 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 C2orf15Q8WU43 125 aaKnown RBP2.73□□□□□ -1.97
LINC00560-201ENST00000564593 KIAA1143Q96AT1 154 aaPredicted RBP2.73□□□□□ -1.97
LINC00560-201ENST00000564593 RCN3Q96D15 328 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 LINC00477Q96M19 166 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 RNF5Q99942 180 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 HOPXQ9BPY8 73 aaPredicted RBP2.73□□□□□ -1.97
LINC00560-201ENST00000564593 ULBP1Q9BZM6 244 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 YIPF3Q9GZM5 350 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 C1orf198Q9H425 327 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 CSNK1G1Q9HCP0 422 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 PRSS16Q9NQE7 514 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 DYRK4Q9NR20 520 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 C8orf17Q9NRJ1 99 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 ENOPH1Q9UHY7 261 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 POMPQ9Y244 141 aa2.73□□□□□ -1.97
LINC00560-201ENST00000564593 ZNF106Q9H2Y7 1883 aaKnown RBP2.72□□□□□ -1.97
LINC00560-201ENST00000564593 ANKRD12Q6UB98 2062 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 TRAV6A0A075B6T7 132 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 PSMD12O00232 456 aaPredicted RBP2.72□□□□□ -1.97
LINC00560-201ENST00000564593 TNFRSF11BO00300 401 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 UBDO15205 165 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 DENRO43583 198 aaKnown RBP2.72□□□□□ -1.97
LINC00560-201ENST00000564593 EIF1BO60739 113 aaKnown RBP2.72□□□□□ -1.97
LINC00560-201ENST00000564593 GLSO94925 669 aaPredicted RBP2.72□□□□□ -1.97
LINC00560-201ENST00000564593 MPZL1O95297 269 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 POLR2IP36954 125 aaKnown RBP2.72□□□□□ -1.97
LINC00560-201ENST00000564593 EIF1P41567 113 aaKnown RBP2.72□□□□□ -1.97
LINC00560-201ENST00000564593 PSMD8P48556 350 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 TTPAP49638 278 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 PSMD4P55036 377 aaKnown RBP2.72□□□□□ -1.97
LINC00560-201ENST00000564593 C5orf64Q2M2E5 130 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 LIN52Q52LA3 116 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 OGFRL1Q5TC84 451 aaPredicted RBP2.72□□□□□ -1.97
LINC00560-201ENST00000564593 H3F3CQ6NXT2 135 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 RTL4Q6ZR62 310 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 ZCCHC23Q6ZST2 131 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 VTCN1Q7Z7D3 282 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 TAC4Q86UU9 113 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 UMODL1-AS1Q8N2C9 162 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 CCNYL1Q8N7R7 359 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 OR1J4Q8NGS1 313 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 DNAJB3Q8WWF6 145 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 ASZ1Q8WWH4 475 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 RERGQ96A58 199 aaPredicted RBP2.72□□□□□ -1.97
LINC00560-201ENST00000564593 CIDECQ96AQ7 238 aaPredicted RBP2.72□□□□□ -1.97
LINC00560-201ENST00000564593 PPP1R14BQ96C90 147 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 MSANTD3Q96H12 275 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 DOK1Q99704 481 aa2.72□□□□□ -1.97
LINC00560-201ENST00000564593 C9orf16Q9BUW7 83 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms