RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 FCN3O75636 299 aa17.11■□□□□ 0.33
CLN3-212ENST00000564574 SEC61A1P61619 476 aaKnown RBP17.11■□□□□ 0.33
CLN3-212ENST00000564574 ATXN7L3Q14CW9 347 aaPredicted RBP17.11■□□□□ 0.33
CLN3-212ENST00000564574 TMEM69Q5SWH9 247 aa17.11■□□□□ 0.33
CLN3-212ENST00000564574 BAIAP2L2Q6UXY1 529 aa17.11■□□□□ 0.33
CLN3-212ENST00000564574 LINC00299Q6ZSB3 139 aa17.11■□□□□ 0.33
CLN3-212ENST00000564574 BPIFB2Q8N4F0 458 aa17.11■□□□□ 0.33
CLN3-212ENST00000564574 SULT4A1Q9BR01 284 aa17.11■□□□□ 0.33
CLN3-212ENST00000564574 NCOR1P1Q9H4R4 102 aa17.11■□□□□ 0.33
CLN3-212ENST00000564574 ETAA1Q9NY74 926 aa17.11■□□□□ 0.33
CLN3-212ENST00000564574 EXTL2Q9UBQ6 330 aa17.11■□□□□ 0.33
CLN3-212ENST00000564574 TRAV18A0A075B6X5 111 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 TRBV23-1A0A0A0MS06 115 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 UBE2QL1A1L167 161 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 H7C1Q1 480 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 IL2RGP31785 369 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 MNDAP41218 407 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 PNLIPRP3Q17RR3 467 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 ZNF260Q3ZCT1 412 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 CDNFQ49AH0 187 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 SLC35E4Q6ICL7 350 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 CNIH2Q6PI25 160 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 BRICD5Q6PL45 260 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 OR4M1Q8NGD0 313 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 OR6Q1Q8NGQ2 317 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 PLPPR1Q8TBJ4 325 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 C15orf40Q8WUR7 153 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 DIRAS2Q96HU8 199 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 FAAP24Q9BTP7 215 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 RIMS4Q9H426 269 aaPredicted RBP17.1■□□□□ 0.33
CLN3-212ENST00000564574 LPAR3Q9UBY5 353 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 POLR3KQ9Y2Y1 108 aaPredicted RBP17.1■□□□□ 0.33
CLN3-212ENST00000564574 CCDC168Q8NDH2 2452 aa17.1■□□□□ 0.33
CLN3-212ENST00000564574 GNB3P16520 340 aa17.09■□□□□ 0.33
CLN3-212ENST00000564574 TNFSF8P32971 234 aa17.09■□□□□ 0.33
CLN3-212ENST00000564574 P2RX3P56373 397 aa17.09■□□□□ 0.33
CLN3-212ENST00000564574 TAS2R20P59543 309 aa17.09■□□□□ 0.33
CLN3-212ENST00000564574 KRBOX4Q5JUW0 171 aa17.09■□□□□ 0.33
CLN3-212ENST00000564574 RSBN1Q5VWQ0 802 aaPredicted RBP17.09■□□□□ 0.33
CLN3-212ENST00000564574 GAPTQ8N292 157 aa17.09■□□□□ 0.33
CLN3-212ENST00000564574 DMRTB1Q96MA1 342 aa17.09■□□□□ 0.33
CLN3-212ENST00000564574 DCTN5Q9BTE1 182 aa17.09■□□□□ 0.33
CLN3-212ENST00000564574 AK3Q9UIJ7 227 aa17.09■□□□□ 0.33
CLN3-212ENST00000564574 MALRD1Q5VYJ5 2156 aa17.09■□□□□ 0.33
CLN3-212ENST00000564574 TMEM30CPA0ZSE6 113 aa17.08■□□□□ 0.32
CLN3-212ENST00000564574 POM121CA8CG34 1229 aa17.08■□□□□ 0.32
CLN3-212ENST00000564574 KIAA1324LA8MWY0 1029 aaPredicted RBP17.08■□□□□ 0.32
CLN3-212ENST00000564574 FAM157AC9JC47 383 aa17.08■□□□□ 0.32
CLN3-212ENST00000564574 MELTFP08582 738 aa17.08■□□□□ 0.32
CLN3-212ENST00000564574 EDDM3BP56851 147 aa17.08■□□□□ 0.32
CLN3-212ENST00000564574 MRPS15P82914 257 aaKnown RBP17.08■□□□□ 0.32
CLN3-212ENST00000564574 MEF2CQ06413 473 aaPredicted RBP17.08■□□□□ 0.32
CLN3-212ENST00000564574 AESQ08117 197 aa17.08■□□□□ 0.32
CLN3-212ENST00000564574 EDDM3AQ14507 147 aa17.08■□□□□ 0.32
CLN3-212ENST00000564574 ZNF497Q6ZNH5 498 aa17.08■□□□□ 0.32
CLN3-212ENST00000564574 BTN2A1Q7KYR7 527 aa17.08■□□□□ 0.32
CLN3-212ENST00000564574 FGFRL1Q8N441 504 aa17.08■□□□□ 0.32
CLN3-212ENST00000564574 C8orf46Q8TAG6 207 aa17.08■□□□□ 0.32
CLN3-212ENST00000564574 H1FXQ92522 213 aaKnown RBP17.08■□□□□ 0.32
CLN3-212ENST00000564574 COQ2Q96H96 371 aa17.08■□□□□ 0.32
CLN3-212ENST00000564574 AUNIPQ9H7T9 357 aa17.08■□□□□ 0.32
CLN3-212ENST00000564574 KCNK7Q9Y2U2 307 aa17.08■□□□□ 0.32
CLN3-212ENST00000564574 LOC105371242A0A075B767 164 aa17.07■□□□□ 0.32
CLN3-212ENST00000564574 hADV38S2A0JD32 116 aa17.07■□□□□ 0.32
CLN3-212ENST00000564574 B4DSR2 109 aa17.07■□□□□ 0.32
CLN3-212ENST00000564574 PHF1O43189 567 aaPredicted RBP17.07■□□□□ 0.32
CLN3-212ENST00000564574 CD3GP09693 182 aa17.07■□□□□ 0.32
CLN3-212ENST00000564574 GZMKP49863 264 aa17.07■□□□□ 0.32
CLN3-212ENST00000564574 RPL31P62899 125 aaKnown RBP17.07■□□□□ 0.32
CLN3-212ENST00000564574 PITPNAQ00169 270 aa17.07■□□□□ 0.32
CLN3-212ENST00000564574 HACD4Q5VWC8 232 aa17.07■□□□□ 0.32
CLN3-212ENST00000564574 RTN4RL2Q86UN3 420 aa17.07■□□□□ 0.32
CLN3-212ENST00000564574 IZUMO1Q8IYV9 350 aa17.07■□□□□ 0.32
CLN3-212ENST00000564574 CMSS1Q9BQ75 279 aaKnown RBP17.07■□□□□ 0.32
CLN3-212ENST00000564574 ZMAT3Q9HA38 289 aaKnown RBP17.07■□□□□ 0.32
CLN3-212ENST00000564574 RPUSD1Q9UJJ7 312 aaKnown RBP17.07■□□□□ 0.32
CLN3-212ENST00000564574 OTOGQ6ZRI0 2925 aa17.06■□□□□ 0.32
CLN3-212ENST00000564574 TRBV6-6A0A0A6YYG2 114 aa17.06■□□□□ 0.32
CLN3-212ENST00000564574 ODAMA1E959 279 aa17.06■□□□□ 0.32
CLN3-212ENST00000564574 MT-ND4P03905 459 aa17.06■□□□□ 0.32
CLN3-212ENST00000564574 ZFP36P26651 326 aaKnown RBP17.06■□□□□ 0.32
CLN3-212ENST00000564574 GLIPR1P48060 266 aa17.06■□□□□ 0.32
CLN3-212ENST00000564574 GNG2P59768 71 aa17.06■□□□□ 0.32
CLN3-212ENST00000564574 ARFRP1Q13795 201 aa17.06■□□□□ 0.32
CLN3-212ENST00000564574 TMEM249Q2WGJ8 235 aa17.06■□□□□ 0.32
CLN3-212ENST00000564574 OLFML2AQ68BL7 652 aa17.06■□□□□ 0.32
CLN3-212ENST00000564574 SPNS3Q6ZMD2 512 aa17.06■□□□□ 0.32
CLN3-212ENST00000564574 CCDC190Q86UF4 302 aa17.06■□□□□ 0.32
CLN3-212ENST00000564574 LINC01356Q8N9X3 169 aa17.06■□□□□ 0.32
CLN3-212ENST00000564574 LY6G5BQ8NDX9 201 aa17.06■□□□□ 0.32
CLN3-212ENST00000564574 C12orf4Q9NQ89 552 aa17.06■□□□□ 0.32
CLN3-212ENST00000564574 OR6C3Q9NZP0 311 aa17.06■□□□□ 0.32
CLN3-212ENST00000564574 KIF25Q9UIL4 384 aa17.06■□□□□ 0.32
CLN3-212ENST00000564574 MEIKINA0A087WXM9 373 aa17.05■□□□□ 0.32
CLN3-212ENST00000564574 PPIAL4CA0A0B4J2A2 164 aa17.05■□□□□ 0.32
CLN3-212ENST00000564574 A0A1W2PPH5 198 aa17.05■□□□□ 0.32
CLN3-212ENST00000564574 TMEM235A6NFC5 223 aa17.05■□□□□ 0.32
CLN3-212ENST00000564574 ENSAO43768 121 aaKnown RBP17.05■□□□□ 0.32
CLN3-212ENST00000564574 NAPSAO96009 420 aa17.05■□□□□ 0.32
CLN3-212ENST00000564574 HLA-DQB1P01920 261 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms