RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 AK3Q9UIJ7 227 aa13.76□□□□□ -0.21
VPS4A-202ENST00000562754 V9GYH0 126 aa13.76□□□□□ -0.21
VPS4A-202ENST00000562754 CREBBPQ92793 2442 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 ITPR3Q14573 2671 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 A0A0G2JMP0 313 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 A0A0X1KG70 313 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 RNF223E7ERA6 249 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 MGST3O14880 152 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 HLA-DQB1P01920 261 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 GSTP1P09211 210 aaKnown RBP13.75□□□□□ -0.21
VPS4A-202ENST00000562754 USF1P22415 310 aaPredicted RBP13.75□□□□□ -0.21
VPS4A-202ENST00000562754 TALDO1P37837 337 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 AESQ08117 197 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 EDDM3AQ14507 147 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 LRRC10Q5BKY1 277 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 Q6ZPA2 131 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 OR4M2Q8NGB6 313 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 PPP1R35Q8TAP8 253 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 RAB39BQ96DA2 213 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 SOSTQ9BQB4 213 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 ING3Q9NXR8 418 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 ETAA1Q9NY74 926 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 CSMD1Q96PZ7 3565 aa13.75□□□□□ -0.21
VPS4A-202ENST00000562754 CYSRT1A8MQ03 144 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 KIAA1324LA8MWY0 1029 aaPredicted RBP13.74□□□□□ -0.21
VPS4A-202ENST00000562754 FAM157AC9JC47 383 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 PHF1O43189 567 aaPredicted RBP13.74□□□□□ -0.21
VPS4A-202ENST00000562754 NDUFB7P17568 137 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 ETV6P41212 452 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 KCNJ3P48549 501 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 PAX5Q02548 391 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 RBM39Q14498 530 aaKnown RBP13.74□□□□□ -0.21
VPS4A-202ENST00000562754 ZNF497Q6ZNH5 498 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 SNX29P2Q8IUI4 249 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 GAPTQ8N292 157 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 MFSD4AQ8N468 514 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 TPRX1Q8N7U7 411 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 OR5D13Q8NGL4 314 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 NUDCD2Q8WVJ2 157 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 ABHD1Q96SE0 405 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 SSBP3Q9BWW4 388 aaPredicted RBP13.74□□□□□ -0.21
VPS4A-202ENST00000562754 REG4Q9BYZ8 158 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 CLN8Q9UBY8 286 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 KIF25Q9UIL4 384 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 ITGB1BP2Q9UKP3 347 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 MRPS7Q9Y2R9 242 aaKnown RBP13.74□□□□□ -0.21
VPS4A-202ENST00000562754 ARHGAP32A7KAX9 2087 aa13.74□□□□□ -0.21
VPS4A-202ENST00000562754 YLPM1P49750 1951 aaKnown RBP13.74□□□□□ -0.21
VPS4A-202ENST00000562754 SERPINE3A8MV23 424 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 A8MXK9 166 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 SSX5O60225 188 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 MELTFP08582 738 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 ZFP36P26651 326 aaKnown RBP13.73□□□□□ -0.21
VPS4A-202ENST00000562754 GLIPR1P48060 266 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 P2RX3P56373 397 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 GNB2P62879 340 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 GUCA2AQ02747 115 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 LOXL1Q08397 574 aaPredicted RBP13.73□□□□□ -0.21
VPS4A-202ENST00000562754 PNLIPRP3Q17RR3 467 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 ESCO2Q56NI9 601 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 KRBOX4Q5JUW0 171 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 HACD4Q5VWC8 232 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 BAIAP2L2Q6UXY1 529 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 LINC00299Q6ZSB3 139 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 GDPD3Q7L5L3 318 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 TCF23Q7RTU1 214 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 MRPL30Q8TCC3 161 aaKnown RBP13.73□□□□□ -0.21
VPS4A-202ENST00000562754 DCTN5Q9BTE1 182 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 AKIP1Q9NQ31 210 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 C19orf12Q9NSK7 152 aa13.73□□□□□ -0.21
VPS4A-202ENST00000562754 SETXQ7Z333 2677 aaKnown RBP13.73□□□□□ -0.21
VPS4A-202ENST00000562754 TMEM30CPA0ZSE6 113 aa13.72□□□□□ -0.21
VPS4A-202ENST00000562754 MEIOCA2RUB1 952 aa13.72□□□□□ -0.21
VPS4A-202ENST00000562754 C22orf46C9J442 243 aa13.72□□□□□ -0.21
VPS4A-202ENST00000562754 CA11O75493 328 aa13.72□□□□□ -0.21
VPS4A-202ENST00000562754 NAPSAO96009 420 aa13.72□□□□□ -0.21
VPS4A-202ENST00000562754 ERP29P30040 261 aaKnown RBP13.72□□□□□ -0.21
VPS4A-202ENST00000562754 NPY4RP50391 375 aa13.72□□□□□ -0.21
VPS4A-202ENST00000562754 EDDM3BP56851 147 aa13.72□□□□□ -0.21
VPS4A-202ENST00000562754 IL18Q14116 193 aa13.72□□□□□ -0.21
VPS4A-202ENST00000562754 ARL6IP1Q15041 203 aa13.72□□□□□ -0.21
VPS4A-202ENST00000562754 ZNF79Q15937 498 aa13.72□□□□□ -0.21
VPS4A-202ENST00000562754 SLC35E4Q6ICL7 350 aa13.72□□□□□ -0.21
VPS4A-202ENST00000562754 FAM131AQ6UXB0 335 aa13.72□□□□□ -0.21
VPS4A-202ENST00000562754 MAPK1IP1LQ8NDC0 245 aa13.72□□□□□ -0.21
VPS4A-202ENST00000562754 H1FXQ92522 213 aaKnown RBP13.72□□□□□ -0.21
VPS4A-202ENST00000562754 CMSS1Q9BQ75 279 aaKnown RBP13.72□□□□□ -0.21
VPS4A-202ENST00000562754 C12orf4Q9NQ89 552 aa13.72□□□□□ -0.21
VPS4A-202ENST00000562754 KIAA2026Q5HYC2 2103 aa13.72□□□□□ -0.21
VPS4A-202ENST00000562754 TRAV39A0A0B4J263 110 aa13.71□□□□□ -0.21
VPS4A-202ENST00000562754 ODAMA1E959 279 aa13.71□□□□□ -0.21
VPS4A-202ENST00000562754 MEX3AA1L020 520 aaKnown RBP13.71□□□□□ -0.21
VPS4A-202ENST00000562754 FABP12A6NFH5 140 aa13.71□□□□□ -0.21
VPS4A-202ENST00000562754 TPPPO94811 219 aa13.71□□□□□ -0.21
VPS4A-202ENST00000562754 MT-ND4P03905 459 aa13.71□□□□□ -0.21
VPS4A-202ENST00000562754 CD3GP09693 182 aa13.71□□□□□ -0.21
VPS4A-202ENST00000562754 GNG2P59768 71 aa13.71□□□□□ -0.21
VPS4A-202ENST00000562754 ARFRP1Q13795 201 aa13.71□□□□□ -0.21
VPS4A-202ENST00000562754 RNASE12Q5GAN4 147 aaKnown RBP13.71□□□□□ -0.21
VPS4A-202ENST00000562754 SPANXN2Q5MJ10 180 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms