RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 ZNF92Q03936 586 aa12.05□□□□□ -0.48
VPS9D1-202ENST00000561976 HIST2H2BEQ16778 126 aa12.05□□□□□ -0.48
VPS9D1-202ENST00000561976 ZNF506Q5JVG8 444 aa12.05□□□□□ -0.48
VPS9D1-202ENST00000561976 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.05□□□□□ -0.48
VPS9D1-202ENST00000561976 SLC25A26Q70HW3 274 aa12.05□□□□□ -0.48
VPS9D1-202ENST00000561976 GPR137CQ8N3F9 429 aa12.05□□□□□ -0.48
VPS9D1-202ENST00000561976 NAT6Q93015 286 aa12.05□□□□□ -0.48
VPS9D1-202ENST00000561976 HIST1H2BHQ93079 126 aa12.05□□□□□ -0.48
VPS9D1-202ENST00000561976 TMEM56Q96MV1 263 aa12.05□□□□□ -0.48
VPS9D1-202ENST00000561976 ALKBH3Q96Q83 286 aaPredicted RBP12.05□□□□□ -0.48
VPS9D1-202ENST00000561976 HIST1H2BNQ99877 126 aa12.05□□□□□ -0.48
VPS9D1-202ENST00000561976 HIST1H2BMQ99879 126 aa12.05□□□□□ -0.48
VPS9D1-202ENST00000561976 OPA3Q9H6K4 179 aa12.05□□□□□ -0.48
VPS9D1-202ENST00000561976 TMEM56-RWDD3S4R434 201 aa12.05□□□□□ -0.48
VPS9D1-202ENST00000561976 ZNF732B4DXR9 585 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 SEC14L6B5MCN3 397 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 PPP1R2P9O14990 202 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 CHST1O43916 411 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 LY86O95711 162 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 NPBWR2P48146 333 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 CALHM1Q8IU99 346 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 GAPTQ8N292 157 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 ZNF611Q8N823 705 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 RBMXL1Q96E39 390 aaKnown RBP12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 SRXN1Q9BYN0 137 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 SIRT7Q9NRC8 400 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 HS3ST3B1Q9Y662 390 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 ZNF587BE7ETH6 402 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 BCAT2O15382 392 aaPredicted RBP12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 TOX3O15405 576 aaPredicted RBP12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 ZIC3O60481 467 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 HBE1P02100 147 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 CST2P09228 141 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 LIFP15018 202 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 GLIPR1P48060 266 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 EXT1Q16394 746 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 TMEM42Q69YG0 159 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 ZNF818PQ6ZRF7 136 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 CLDND2Q8NHS1 167 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 EXTL1Q92935 676 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 PLSCR2Q9NRY7 297 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 IL36GQ9NZH8 169 aa12.04□□□□□ -0.48
VPS9D1-202ENST00000561976 PRUNE2Q8WUY3 3088 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 CXorf65A6NEN9 183 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 TMEM50AO95807 157 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 RPS18P62269 152 aaKnown RBP12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 GFI1BQ5VTD9 330 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 S100PBPQ96BU1 408 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 GPR61Q9BZJ8 451 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 TMEM38BQ9NVV0 291 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 GNG13Q9P2W3 67 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 PTRH2Q9Y3E5 179 aaKnown RBP12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 ADAMTS20P59510 1910 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 SDK2Q58EX2 2172 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 HLA-DRB3P79483 266 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 PSG4Q00888 419 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 BAXQ07812 192 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 ZNF385CQ66K41 422 aaPredicted RBP12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 GUSBP11Q6P575 273 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 SLC35E3Q7Z769 313 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 THNSL2Q86YJ6 484 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 NEK7Q8TDX7 302 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 PCED1AQ9H1Q7 454 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 GFOD1Q9NXC2 390 aa12.03□□□□□ -0.48
VPS9D1-202ENST00000561976 hCG_38984A0A1B0GV85 526 aa12.02□□□□□ -0.48
VPS9D1-202ENST00000561976 H3BP45 60 aa12.02□□□□□ -0.48
VPS9D1-202ENST00000561976 RPL36A-HNRNPH2H7BZ11 118 aa12.02□□□□□ -0.48
VPS9D1-202ENST00000561976 HSPB6O14558 160 aa12.02□□□□□ -0.48
VPS9D1-202ENST00000561976 TNFSF12O43508 249 aa12.02□□□□□ -0.48
VPS9D1-202ENST00000561976 SCTP09683 121 aa12.02□□□□□ -0.48
VPS9D1-202ENST00000561976 JMJD7P0C870 316 aa12.02□□□□□ -0.48
VPS9D1-202ENST00000561976 BTF3P20290 206 aaKnown RBP12.02□□□□□ -0.48
VPS9D1-202ENST00000561976 VDAC1P21796 283 aa12.02□□□□□ -0.48
VPS9D1-202ENST00000561976 RAB11AP62491 216 aa12.02□□□□□ -0.48
VPS9D1-202ENST00000561976 OR2T2Q6IF00 324 aa12.02□□□□□ -0.48
VPS9D1-202ENST00000561976 ZNF816-ZNF321PA0A0X1KG74 233 aa12.02□□□□□ -0.49
VPS9D1-202ENST00000561976 OR6C6A6NF89 314 aa12.02□□□□□ -0.49
VPS9D1-202ENST00000561976 F10P00742 488 aa12.02□□□□□ -0.49
VPS9D1-202ENST00000561976 SOD3P08294 240 aa12.02□□□□□ -0.49
VPS9D1-202ENST00000561976 RAC1P63000 192 aa12.02□□□□□ -0.49
VPS9D1-202ENST00000561976 CCL7P80098 99 aa12.02□□□□□ -0.49
VPS9D1-202ENST00000561976 ID3Q02535 119 aa12.02□□□□□ -0.49
VPS9D1-202ENST00000561976 KHDC3LQ587J8 217 aa12.02□□□□□ -0.49
VPS9D1-202ENST00000561976 ODF3L1Q8IXM7 274 aa12.02□□□□□ -0.49
VPS9D1-202ENST00000561976 ABHD14BQ96IU4 210 aa12.02□□□□□ -0.49
VPS9D1-202ENST00000561976 ATP5SQ99766 215 aa12.02□□□□□ -0.49
VPS9D1-202ENST00000561976 CALHM2Q9HA72 323 aa12.02□□□□□ -0.49
VPS9D1-202ENST00000561976 ZFP92A6NM28 416 aa12.01□□□□□ -0.49
VPS9D1-202ENST00000561976 IFNA5P01569 189 aa12.01□□□□□ -0.49
VPS9D1-202ENST00000561976 GPX4P36969 197 aaPredicted RBP12.01□□□□□ -0.49
VPS9D1-202ENST00000561976 CD200P41217 278 aa12.01□□□□□ -0.49
VPS9D1-202ENST00000561976 PCOLCEQ15113 449 aa12.01□□□□□ -0.49
VPS9D1-202ENST00000561976 AAED1Q7RTV5 226 aa12.01□□□□□ -0.49
VPS9D1-202ENST00000561976 STX12Q86Y82 276 aa12.01□□□□□ -0.49
VPS9D1-202ENST00000561976 SIGLEC12Q96PQ1 595 aa12.01□□□□□ -0.49
VPS9D1-202ENST00000561976 CCL28Q9NRJ3 127 aa12.01□□□□□ -0.49
VPS9D1-202ENST00000561976 WNT16Q9UBV4 365 aa12.01□□□□□ -0.49
VPS9D1-202ENST00000561976 ZNF391Q9UJN7 358 aa12.01□□□□□ -0.49
VPS9D1-202ENST00000561976 IGKV1D-13A0A0B4J2D9 117 aa12.01□□□□□ -0.49
VPS9D1-202ENST00000561976 IGHV5-10-1A0A0J9YXX1 117 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms