RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 ZNF32P17041 273 aa10.65□□□□□ -0.7
LDLR-205ENST00000557933 VAMP2P63027 116 aa10.65□□□□□ -0.7
LDLR-205ENST00000557933 MRPS34P82930 218 aaKnown RBP10.65□□□□□ -0.7
LDLR-205ENST00000557933 ZNF92Q03936 586 aa10.65□□□□□ -0.7
LDLR-205ENST00000557933 ZNF818PQ6ZRF7 136 aa10.65□□□□□ -0.7
LDLR-205ENST00000557933 GPR137CQ8N3F9 429 aa10.65□□□□□ -0.7
LDLR-205ENST00000557933 IL1F10Q8WWZ1 152 aa10.65□□□□□ -0.7
LDLR-205ENST00000557933 CEP192Q8TEP8 1941 aa10.65□□□□□ -0.7
LDLR-205ENST00000557933 A0A096LPE4 126 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 C3orf85A0A1B0GTC6 90 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 A0A1W2PPZ6 126 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 CHST1O43916 411 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 CD63P08962 238 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 ZNF16P17020 682 aaPredicted RBP10.64□□□□□ -0.71
LDLR-205ENST00000557933 CCL1P22362 96 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 CD27P26842 260 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 ELLP55199 621 aaPredicted RBP10.64□□□□□ -0.71
LDLR-205ENST00000557933 GUSBP11Q6P575 273 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 TMEM252Q8N6L7 170 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 ZNF610Q8N9Z0 462 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 OR14L1PQ8NHC6 308 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 NABP1Q96AH0 204 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 MVB12AQ96EY5 273 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 SRXN1Q9BYN0 137 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 PRDM6Q9NQX0 595 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 CCL28Q9NRJ3 127 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 AURKAIP1Q9NWT8 199 aaPredicted RBP10.64□□□□□ -0.71
LDLR-205ENST00000557933 A0A0G2JMM0 328 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 A0A0G2JRQ6 117 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 A0A1W2PPB8 328 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 A0A1W2PRS3 328 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 AQP7P3A6NL99 342 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 KIR3DP1A8MWS1 328 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 TLX3O43711 291 aaPredicted RBP10.64□□□□□ -0.71
LDLR-205ENST00000557933 PPYP01298 95 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 RBP2P50120 134 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 HOXA4Q00056 320 aaPredicted RBP10.64□□□□□ -0.71
LDLR-205ENST00000557933 SHBQ15464 509 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 CYB5R2Q6BCY4 276 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 BEND4Q6ZU67 534 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 WDR5BQ86VZ2 330 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 LURAP1LQ8IV03 231 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 CA5BP1Q8WTZ4 195 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 CALHM2Q9HA72 323 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 UFSP2Q9NUQ7 469 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 SIT1Q9Y3P8 196 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 NRASP01111 189 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 TRGC1P0CF51 173 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 FUT3P21217 361 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 RAB5CP51148 216 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 ICAM4Q14773 271 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 RHEBQ15382 184 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 PRSS8Q16651 343 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 CMTM1Q8IZ96 169 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 CPNE4Q96A23 557 aaPredicted RBP10.64□□□□□ -0.71
LDLR-205ENST00000557933 C18orf12Q96KH6 178 aa10.64□□□□□ -0.71
LDLR-205ENST00000557933 GVINP1Q7Z2Y8 2422 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 A0A0J9YW62 118 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 SLC34A2O95436 690 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 SRP19P09132 144 aaKnown RBP10.63□□□□□ -0.71
LDLR-205ENST00000557933 SNRPCP09234 159 aaKnown RBP10.63□□□□□ -0.71
LDLR-205ENST00000557933 HOXA5P20719 270 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 NKX6-1P78426 367 aaPredicted RBP10.63□□□□□ -0.71
LDLR-205ENST00000557933 SSX7Q7RTT5 188 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 ODF3L1Q8IXM7 274 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 RNASE11Q8TAA1 199 aaKnown RBP10.63□□□□□ -0.71
LDLR-205ENST00000557933 ABHD5Q8WTS1 349 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 DNASE2BQ8WZ79 361 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 SPACA9Q96E40 222 aaPredicted RBP10.63□□□□□ -0.71
LDLR-205ENST00000557933 NUDT16L1Q9BRJ7 211 aaKnown RBP10.63□□□□□ -0.71
LDLR-205ENST00000557933 TM2D1Q9BX74 207 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 HS3ST1O14792 307 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 PHOX2AO14813 284 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 MPPED1O15442 326 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 EDN3P14138 238 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 CXCL12P48061 93 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 HMGN3Q15651 99 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 AKR1C8PQ5T2L2 129 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 GPR157Q5UAW9 335 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 OSR2Q8N2R0 312 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 ZNF611Q8N823 705 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 TCEAL7Q9BRU2 100 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 PRDM13Q9H4Q3 707 aa10.63□□□□□ -0.71
LDLR-205ENST00000557933 UNKLQ9H9P5 680 aaKnown RBP10.63□□□□□ -0.71
LDLR-205ENST00000557933 PPP1R2P9O14990 202 aa10.62□□□□□ -0.71
LDLR-205ENST00000557933 ZFAND5O76080 213 aa10.62□□□□□ -0.71
LDLR-205ENST00000557933 CNOT4O95628 575 aaKnown RBP10.62□□□□□ -0.71
LDLR-205ENST00000557933 NDUFB7P17568 137 aa10.62□□□□□ -0.71
LDLR-205ENST00000557933 CDX1P47902 265 aaPredicted RBP10.62□□□□□ -0.71
LDLR-205ENST00000557933 RTP5Q14D33 572 aa10.62□□□□□ -0.71
LDLR-205ENST00000557933 PLPP5Q8NEB5 264 aa10.62□□□□□ -0.71
LDLR-205ENST00000557933 PP6455Q8WZ26 134 aa10.62□□□□□ -0.71
LDLR-205ENST00000557933 RDH5Q92781 318 aa10.62□□□□□ -0.71
LDLR-205ENST00000557933 C14orf144Q96I85 54 aa10.62□□□□□ -0.71
LDLR-205ENST00000557933 THOC3Q96J01 351 aaKnown RBP10.62□□□□□ -0.71
LDLR-205ENST00000557933 NIPSNAP3BQ9BS92 247 aa10.62□□□□□ -0.71
LDLR-205ENST00000557933 ZNF286AQ9HBT8 521 aa10.62□□□□□ -0.71
LDLR-205ENST00000557933 OCIAD1Q9NX40 245 aa10.62□□□□□ -0.71
LDLR-205ENST00000557933 POMT1Q9Y6A1 747 aa10.62□□□□□ -0.71
LDLR-205ENST00000557933 V9GYS6 101 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms