RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 NXPH2O95156 264 aa22.33■■□□□ 1.16
CCDC88C-205ENST00000553403 MPC2O95563 127 aa22.33■■□□□ 1.16
CCDC88C-205ENST00000553403 ZNF44P15621 663 aa22.33■■□□□ 1.16
CCDC88C-205ENST00000553403 HERV-K104P61576 105 aa22.33■■□□□ 1.16
CCDC88C-205ENST00000553403 FIP1L1Q6UN15 594 aaKnown RBP22.33■■□□□ 1.16
CCDC88C-205ENST00000553403 Q6ZR03 302 aa22.33■■□□□ 1.16
CCDC88C-205ENST00000553403 SLC38A6Q8IZM9 456 aa22.33■■□□□ 1.16
CCDC88C-205ENST00000553403 RDH5Q92781 318 aa22.33■■□□□ 1.16
CCDC88C-205ENST00000553403 TOMM40LQ969M1 308 aa22.33■■□□□ 1.16
CCDC88C-205ENST00000553403 FAM210AQ96ND0 272 aa22.33■■□□□ 1.16
CCDC88C-205ENST00000553403 Q9UFV3 132 aa22.33■■□□□ 1.16
CCDC88C-205ENST00000553403 TUBD1Q9UJT1 453 aa22.33■■□□□ 1.16
CCDC88C-205ENST00000553403 ESPL1Q14674 2120 aa22.32■■□□□ 1.16
CCDC88C-205ENST00000553403 SVILO95425 2214 aa22.32■■□□□ 1.16
CCDC88C-205ENST00000553403 CRYAAP02489 173 aa22.32■■□□□ 1.16
CCDC88C-205ENST00000553403 BMP5P22003 454 aa22.32■■□□□ 1.16
CCDC88C-205ENST00000553403 S100A11P31949 105 aa22.32■■□□□ 1.16
CCDC88C-205ENST00000553403 RBMXP38159 391 aaKnown RBP22.32■■□□□ 1.16
CCDC88C-205ENST00000553403 IGSF11Q5DX21 431 aa22.32■■□□□ 1.16
CCDC88C-205ENST00000553403 C11orf87Q6NUJ2 197 aa22.32■■□□□ 1.16
CCDC88C-205ENST00000553403 TMUB2Q71RG4 321 aa22.32■■□□□ 1.16
CCDC88C-205ENST00000553403 C11orf53Q8IXP5 236 aa22.32■■□□□ 1.16
CCDC88C-205ENST00000553403 ZNF680Q8NEM1 530 aa22.32■■□□□ 1.16
CCDC88C-205ENST00000553403 LILRB4Q8NHJ6 448 aa22.32■■□□□ 1.16
CCDC88C-205ENST00000553403 ELOVL5Q9NYP7 299 aa22.32■■□□□ 1.16
CCDC88C-205ENST00000553403 FZR1Q9UM11 496 aa22.32■■□□□ 1.16
CCDC88C-205ENST00000553403 EEF1E1-BLOC1S5C9J1V9 151 aa22.31■■□□□ 1.16
CCDC88C-205ENST00000553403 H7C1Q1 480 aa22.31■■□□□ 1.16
CCDC88C-205ENST00000553403 SH2D1BO14796 132 aa22.31■■□□□ 1.16
CCDC88C-205ENST00000553403 AADACP22760 399 aa22.31■■□□□ 1.16
CCDC88C-205ENST00000553403 PPP1R1CQ8WVI7 109 aa22.31■■□□□ 1.16
CCDC88C-205ENST00000553403 C1orf123Q9NWV4 160 aa22.31■■□□□ 1.16
CCDC88C-205ENST00000553403 TEX13DA0A0J9YY54 714 aaPredicted RBP22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 OR2H2O95918 312 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 TK1P04183 234 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 FAM87AP0C7U9 286 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 ZNF250P15622 560 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 GLRXP35754 106 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 PIGPP57054 158 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 FXYD4P59646 89 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 FAM27E3Q08E93 113 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 ABCA11PQ4W5N1 156 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 RSRP1Q9BUV0 290 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 ASF1BQ9NVP2 202 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 C13orf42A0A1B0GVH6 325 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 SLC33A1O00400 549 aaPredicted RBP22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 DIRAS3O95661 229 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 PPYP01298 95 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 IFNA7P01567 189 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 SCTP09683 121 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 HTR2BP41595 481 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 NKX6-1P78426 367 aaPredicted RBP22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 RBPJQ06330 500 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 PAN3Q58A45 887 aaKnown RBP22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 ZNF546Q86UE3 836 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 GALNT14Q96FL9 552 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 MFFQ9GZY8 342 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 NAA60Q9H7X0 242 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 KCNIP3Q9Y2W7 256 aa22.3■■□□□ 1.16
CCDC88C-205ENST00000553403 ZNF205O95201 554 aa22.29■■□□□ 1.16
CCDC88C-205ENST00000553403 SYT3Q9BQG1 590 aa22.29■■□□□ 1.16
CCDC88C-205ENST00000553403 TMEM165Q9HC07 324 aa22.29■■□□□ 1.16
CCDC88C-205ENST00000553403 GLS2Q9UI32 602 aa22.29■■□□□ 1.16
CCDC88C-205ENST00000553403 C3orf80F5H4A9 247 aa22.28■■□□□ 1.16
CCDC88C-205ENST00000553403 IGHV3-13P01766 116 aa22.28■■□□□ 1.16
CCDC88C-205ENST00000553403 MOB1BQ7L9L4 216 aa22.28■■□□□ 1.16
CCDC88C-205ENST00000553403 GAPTQ8N292 157 aa22.28■■□□□ 1.16
CCDC88C-205ENST00000553403 CCDC71LQ8N9Z2 235 aa22.28■■□□□ 1.16
CCDC88C-205ENST00000553403 OR4A4PQ8NGN8 299 aa22.28■■□□□ 1.16
CCDC88C-205ENST00000553403 MSL2Q9HCI7 577 aa22.28■■□□□ 1.16
CCDC88C-205ENST00000553403 RASL12Q9NYN1 266 aa22.28■■□□□ 1.16
CCDC88C-205ENST00000553403 PRR13Q9NZ81 148 aa22.28■■□□□ 1.16
CCDC88C-205ENST00000553403 ADAP1O75689 374 aa22.27■■□□□ 1.16
CCDC88C-205ENST00000553403 RPS23P62266 143 aaKnown RBP22.27■■□□□ 1.16
CCDC88C-205ENST00000553403 HLA-DRB3P79483 266 aa22.27■■□□□ 1.16
CCDC88C-205ENST00000553403 PRR30Q53SZ7 412 aaPredicted RBP22.27■■□□□ 1.16
CCDC88C-205ENST00000553403 ALKBH2Q6NS38 261 aa22.27■■□□□ 1.16
CCDC88C-205ENST00000553403 OR5T2Q8NGG2 359 aa22.27■■□□□ 1.16
CCDC88C-205ENST00000553403 THAP6Q8TBB0 222 aa22.27■■□□□ 1.16
CCDC88C-205ENST00000553403 RTN4IP1Q8WWV3 396 aaPredicted RBP22.27■■□□□ 1.16
CCDC88C-205ENST00000553403 VRK1Q99986 396 aaPredicted RBP22.27■■□□□ 1.16
CCDC88C-205ENST00000553403 METTL8Q9H825 291 aaKnown RBP22.27■■□□□ 1.16
CCDC88C-205ENST00000553403 JKAMPQ9P055 326 aa22.27■■□□□ 1.16
CCDC88C-205ENST00000553403 TNFSF18Q9UNG2 199 aa22.27■■□□□ 1.16
CCDC88C-205ENST00000553403 A0A0D9SG52 128 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 SIRPB1O00241 398 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 TUSC2O75896 110 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 PSMB6P28072 239 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 CD200P41217 278 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 HERPUD1Q15011 391 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 MSMPQ1L6U9 139 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 WDR82Q6UXN9 313 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 C20orf204Q6ZNR8 217 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 FAM185AQ8N0U4 392 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 C2orf50Q96LR7 162 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 SUCNR1Q9BXA5 334 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 ARL6Q9H0F7 186 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 SLC2A9Q9NRM0 540 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 RDH8Q9NYR8 311 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 PCDHB10Q9UN67 800 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms