RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 STPG1Q5TH74 334 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 ZNF787Q6DD87 383 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 TPRX1Q8N7U7 411 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 SLC35G3Q8N808 338 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 ZNF524Q96C55 264 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 DOCK10Q96BY6 2186 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 GBF1Q92538 1859 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 LRP5LA4QPB2 252 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 ZNF727A8MUV8 499 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 MPTX1A8MV57 137 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 M0R296 226 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 CHST1O43916 411 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 FAM24BQ8N5W8 94 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 OR2J1Q9GZK6 312 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 NIT2Q9NQR4 276 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 ARG1P05089 322 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 HIST2H3AQ71DI3 136 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 OR10P1Q8NGE3 313 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 MALSU1Q96EH3 234 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 TECTBQ96PL2 329 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 HIPK2Q9H2X6 1198 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 INTS1Q8N201 2190 aaKnown RBP13.62□□□□□ -0.23
CUX1-211ENST00000546411 MKI67P46013 3256 aaKnown RBP13.62□□□□□ -0.23
CUX1-211ENST00000546411 SHOXO15266 292 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 EIF3IQ13347 325 aaKnown RBP13.62□□□□□ -0.23
CUX1-211ENST00000546411 LPAR3Q9UBY5 353 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 PSG11Q9UQ72 335 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 CLDN16Q9Y5I7 305 aa13.62□□□□□ -0.23
CUX1-211ENST00000546411 HNF1AP20823 631 aa13.61□□□□□ -0.23
CUX1-211ENST00000546411 ID4P47928 161 aa13.61□□□□□ -0.23
CUX1-211ENST00000546411 FHL1Q13642 323 aa13.61□□□□□ -0.23
CUX1-211ENST00000546411 ZNF239Q16600 458 aaKnown RBP13.61□□□□□ -0.23
CUX1-211ENST00000546411 VAX1Q5SQQ9 334 aa13.61□□□□□ -0.23
CUX1-211ENST00000546411 TAAR3PQ9P1P4 343 aa13.61□□□□□ -0.23
CUX1-211ENST00000546411 A0A1B0GTI1 187 aa13.61□□□□□ -0.23
CUX1-211ENST00000546411 SCTP09683 121 aa13.61□□□□□ -0.23
CUX1-211ENST00000546411 TMEM50BP56557 158 aa13.61□□□□□ -0.23
CUX1-211ENST00000546411 GUCA2BQ16661 112 aa13.61□□□□□ -0.23
CUX1-211ENST00000546411 TRAV17A0A0B4J275 112 aa13.61□□□□□ -0.23
CUX1-211ENST00000546411 FGF8P55075 233 aaPredicted RBP13.61□□□□□ -0.23
CUX1-211ENST00000546411 RPP30P78346 268 aaKnown RBP13.61□□□□□ -0.23
CUX1-211ENST00000546411 SURF2Q15527 256 aaPredicted RBP13.61□□□□□ -0.23
CUX1-211ENST00000546411 PHYHD1Q5SRE7 291 aa13.61□□□□□ -0.23
CUX1-211ENST00000546411 BTNL3Q6UXE8 466 aa13.61□□□□□ -0.23
CUX1-211ENST00000546411 RPH3ALQ9UNE2 315 aa13.61□□□□□ -0.23
CUX1-211ENST00000546411 STRAPQ9Y3F4 350 aaKnown RBP13.61□□□□□ -0.23
CUX1-211ENST00000546411 E9PQ18 207 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 ZIC3O60481 467 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 ACKR3P25106 362 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 PSMB3P49720 205 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 FLI1Q01543 452 aaPredicted RBP13.6□□□□□ -0.23
CUX1-211ENST00000546411 DHODHQ02127 395 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 ZNF154Q13106 437 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 NHLRC3Q5JS37 347 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 IL34Q6ZMJ4 242 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 MDP1Q86V88 176 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 MED9Q9NWA0 146 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 PRSS50Q9UI38 385 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 SYNGR1O43759 233 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 SUCLG1P53597 346 aaKnown RBP13.6□□□□□ -0.23
CUX1-211ENST00000546411 UBE2G2P60604 165 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 RNF144BQ7Z419 303 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 OR2D2Q9H210 308 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 NUDT19A8MXV4 375 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 MT-CO2P00403 227 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 CLPSP04118 112 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 LPAR6P43657 344 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 RBM11P57052 281 aaKnown RBP13.6□□□□□ -0.23
CUX1-211ENST00000546411 ENDOGQ14249 297 aaKnown RBP13.6□□□□□ -0.23
CUX1-211ENST00000546411 IZUMO4Q1ZYL8 232 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 PPP1R32Q7Z5V6 425 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 STPG2Q8N412 459 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 OR10S1Q8NGN2 331 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 OR1K1Q8NGR3 316 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 LAMA2P24043 3122 aaKnown RBP13.6□□□□□ -0.23
CUX1-211ENST00000546411 BRCA2P51587 3418 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 EIF3GO75821 320 aaKnown RBP eCLIP13.6□□□□□ -0.23
CUX1-211ENST00000546411 IGHMP01871 453 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 Q3ZCU0 254 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 RGS7BPQ6MZT1 257 aaPredicted RBP13.6□□□□□ -0.23
CUX1-211ENST00000546411 OR4F5Q8NH21 305 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 MRGPRFQ96AM1 343 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 FAM131CQ96AQ9 280 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 OR4F4Q96R69 305 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 GPR87Q9BY21 358 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 SLC26A1Q9H2B4 701 aa13.6□□□□□ -0.23
CUX1-211ENST00000546411 MSGN1A6NI15 193 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 OR8U8P0C7N1 319 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 ZNF17P17021 662 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 UQCC3Q6UW78 93 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 FAM74A7A6NL05 159 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 K7ESF4 209 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 M0R1X1 148 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 AQP7O14520 342 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 SP1P08047 785 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 PRF1P14222 555 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 SMIM21Q3B7S5 101 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 FAM74A3Q4VXF1 159 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 DECR2Q9NUI1 292 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 PLXNA4Q9HCM2 1894 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms