RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 LCE6AA0A183 80 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 LEUTXA8MZ59 168 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 ISG15P05161 165 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 HTR1AP08908 422 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 ERP29P30040 261 aaKnown RBP10.11□□□□□ -0.79
USP28-212ENST00000544750 GDNFP39905 211 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 ETV1P50549 477 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 CCR9P51686 369 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 LUMP51884 338 aaPredicted RBP10.11□□□□□ -0.79
USP28-212ENST00000544750 GP2P55259 537 aaKnown RBP10.11□□□□□ -0.79
USP28-212ENST00000544750 UBE2V2Q15819 145 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 C9orf152Q5JTZ5 239 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 HEPN1Q6WQI6 88 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 SETD9Q8NE22 299 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 KLHL30-AS1Q8NEE0 82 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 OR51A4Q8NGJ6 313 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 ZNF596Q8TC21 504 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 CHPT1Q8WUD6 406 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 ADAT3Q96EY9 351 aaPredicted RBP10.11□□□□□ -0.79
USP28-212ENST00000544750 CEP19Q96LK0 163 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 NOL4LQ96MY1 436 aaPredicted RBP10.11□□□□□ -0.79
USP28-212ENST00000544750 CHST5Q9GZS9 411 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 IL36RNQ9UBH0 155 aa10.11□□□□□ -0.79
USP28-212ENST00000544750 UBE2J1Q9Y385 318 aaPredicted RBP10.11□□□□□ -0.79
USP28-212ENST00000544750 ALKBH1Q13686 389 aaKnown RBP10.1□□□□□ -0.79
USP28-212ENST00000544750 GRK1Q15835 563 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 HLA-DRB5Q30154 266 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 TPTE2P1Q5T6R2 138 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 PRAMEF5Q5TYX0 476 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 TMEM244Q5VVB8 128 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 XAF1Q6GPH4 301 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 OR52W1Q6IF63 320 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 THNSL2Q86YJ6 484 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 ZNF695Q8IW36 515 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 CCDC54Q8NEL0 328 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 CORO2AQ92828 525 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 DUX3Q96PT4 197 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 CHST6Q9GZX3 395 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 PLEKHA1Q9HB21 404 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 ZNF286AQ9HBT8 521 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 SCOCQ9UIL1 159 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 MOB4Q9Y3A3 225 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 HSPE1-MOB4S4R3N1 261 aa10.1□□□□□ -0.79
USP28-212ENST00000544750 A0A087X0M5 115 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 IGKV1-9A0A0C4DH69 117 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 A0A1B0GX30 115 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 FAM172BPA6NC97 362 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 NUDT19A8MXV4 375 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 OOSP1A8MZH6 123 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 BUB1B-PAK6H3BSN5 160 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 CCL24O00175 119 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 MGST3O14880 152 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 HAND1O96004 215 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 OR3A1P47881 315 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 ARHGDIBP52566 201 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 GTF2A1P52655 376 aaPredicted RBP10.09□□□□□ -0.79
USP28-212ENST00000544750 AQP4P55087 323 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 UTF1Q5T230 341 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 OR2G6Q5TZ20 316 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 C8orf59Q8N0T1 100 aaPredicted RBP10.09□□□□□ -0.79
USP28-212ENST00000544750 COMMD1Q8N668 190 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 C5orf56Q8N8D9 126 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 TRMT10AQ8TBZ6 339 aaKnown RBP10.09□□□□□ -0.79
USP28-212ENST00000544750 RGP1Q92546 391 aaPredicted RBP10.09□□□□□ -0.79
USP28-212ENST00000544750 SLAMF9Q96A28 289 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 C10orf35Q96D05 121 aa10.09□□□□□ -0.79
USP28-212ENST00000544750 MRPL48Q96GC5 212 aaKnown RBP10.09□□□□□ -0.79
USP28-212ENST00000544750 DIMT1Q9UNQ2 313 aaKnown RBP10.09□□□□□ -0.79
USP28-212ENST00000544750 PLECQ15149 4684 aaKnown RBP10.09□□□□□ -0.79
USP28-212ENST00000544750 LALBAP00709 142 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 IGHG2P01859 326 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 CDK2P24941 298 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 DCKP27707 260 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 P2RX3P56373 397 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 DOC2BQ14184 412 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 ZNF146Q15072 292 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 C9orf66Q5T8R8 295 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 UTS2BQ765I0 119 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 ZNF485Q8NCK3 441 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 Q8NFD4 153 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 PP6455Q8WZ26 134 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 GGHQ92820 318 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 CREB3L1Q96BA8 519 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 RCHY1Q96PM5 261 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 PDCD1LG2Q9BQ51 273 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 TAS2R3Q9NYW6 316 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 CLEC2DQ9UHP7 191 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 LINC00527Q9UJ94 153 aa10.08□□□□□ -0.8
USP28-212ENST00000544750 FAM230AA0A1W2PPH8 454 aa10.07□□□□□ -0.8
USP28-212ENST00000544750 FGF16O43320 207 aa10.07□□□□□ -0.8
USP28-212ENST00000544750 GATBO75879 557 aaKnown RBP10.07□□□□□ -0.8
USP28-212ENST00000544750 GABRR1P24046 479 aa10.07□□□□□ -0.8
USP28-212ENST00000544750 DUSP1P28562 367 aa10.07□□□□□ -0.8
USP28-212ENST00000544750 CEACAM3P40198 252 aa10.07□□□□□ -0.8
USP28-212ENST00000544750 ECI1P42126 302 aa10.07□□□□□ -0.8
USP28-212ENST00000544750 GBX2P52951 348 aaPredicted RBP10.07□□□□□ -0.8
USP28-212ENST00000544750 MRPL28Q13084 256 aaKnown RBP10.07□□□□□ -0.8
USP28-212ENST00000544750 CDK5R1Q15078 307 aa10.07□□□□□ -0.8
USP28-212ENST00000544750 CCDC144NLQ6NUI1 221 aa10.07□□□□□ -0.8
USP28-212ENST00000544750 SLC25A26Q70HW3 274 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms