RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 FRZBQ92765 325 aa9.72□□□□□ -0.85
SYNE1-237ENST00000539504 EXTL1Q92935 676 aa9.72□□□□□ -0.85
SYNE1-237ENST00000539504 RBMXL1Q96E39 390 aaKnown RBP9.72□□□□□ -0.85
SYNE1-237ENST00000539504 YPEL4Q96NS1 127 aa9.72□□□□□ -0.85
SYNE1-237ENST00000539504 SIRT7Q9NRC8 400 aa9.72□□□□□ -0.85
SYNE1-237ENST00000539504 TRIOO75962 3097 aa9.72□□□□□ -0.85
SYNE1-237ENST00000539504 A0A087WZY1 265 aa9.72□□□□□ -0.85
SYNE1-237ENST00000539504 MAS1LP35410 378 aa9.72□□□□□ -0.85
SYNE1-237ENST00000539504 FGF8P55075 233 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-237ENST00000539504 UCP3P55916 312 aa9.72□□□□□ -0.85
SYNE1-237ENST00000539504 TMEM267Q0VDI3 215 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-237ENST00000539504 RAB35Q15286 201 aa9.72□□□□□ -0.85
SYNE1-237ENST00000539504 ZNF506Q5JVG8 444 aa9.72□□□□□ -0.85
SYNE1-237ENST00000539504 HIST2H3PS2Q5TEC6 136 aa9.72□□□□□ -0.85
SYNE1-237ENST00000539504 SELENOHQ8IZQ5 122 aaKnown RBP9.72□□□□□ -0.85
SYNE1-237ENST00000539504 GPR137CQ8N3F9 429 aa9.72□□□□□ -0.85
SYNE1-237ENST00000539504 CCDC54Q8NEL0 328 aa9.72□□□□□ -0.85
SYNE1-237ENST00000539504 A0A087WWC5 75 aa9.72□□□□□ -0.85
SYNE1-237ENST00000539504 ZNHIT1O43257 154 aa9.72□□□□□ -0.85
SYNE1-237ENST00000539504 VAMP5O95183 116 aa9.72□□□□□ -0.85
SYNE1-237ENST00000539504 HIST1H1BP16401 226 aaKnown RBP9.72□□□□□ -0.85
SYNE1-237ENST00000539504 USF2Q15853 346 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-237ENST00000539504 INTS12Q96CB8 462 aaKnown RBP9.72□□□□□ -0.85
SYNE1-237ENST00000539504 LAMA1P25391 3075 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 C10orf142B7Z368 130 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 PGA5P0DJD9 388 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 LMO1P25800 156 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 OTX1P32242 354 aaPredicted RBP9.71□□□□□ -0.85
SYNE1-237ENST00000539504 NPBWR2P48146 333 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 TLE1Q04724 770 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 ZNF880Q6PDB4 577 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 KMT5CQ86Y97 462 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 CARFQ8N187 725 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 HIST3H2BBQ8N257 126 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 ZNF611Q8N823 705 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 OR51H1Q8NH63 302 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 CLDND2Q8NHS1 167 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 TMEM54Q969K7 222 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 FOXD3Q9UJU5 478 aaPredicted RBP9.71□□□□□ -0.85
SYNE1-237ENST00000539504 A0A087X0M5 115 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 IGLV3-32A0A0A0MS00 114 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 A0A1B0GX30 115 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 TERTO14746 1132 aaKnown RBP9.71□□□□□ -0.85
SYNE1-237ENST00000539504 PHOX2AO14813 284 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 FUT6P51993 359 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 FAM27BQ5VT28 67 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 ZNF787Q6DD87 383 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 ZNF818PQ6ZRF7 136 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 SLC35E3Q7Z769 313 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 FAM185AQ8N0U4 392 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 PACRGQ96M98 296 aaPredicted RBP9.71□□□□□ -0.85
SYNE1-237ENST00000539504 CABLES2Q9BTV7 478 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 AKIRIN1Q9H9L7 192 aaPredicted RBP9.71□□□□□ -0.85
SYNE1-237ENST00000539504 CALHM2Q9HA72 323 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 CCL28Q9NRJ3 127 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 CA14Q9ULX7 337 aa9.71□□□□□ -0.85
SYNE1-237ENST00000539504 CLDN34H7C241 214 aa9.71□□□□□ -0.86
SYNE1-237ENST00000539504 PTBP3O95758 552 aaKnown RBP9.71□□□□□ -0.86
SYNE1-237ENST00000539504 TMEM50AO95807 157 aa9.71□□□□□ -0.86
SYNE1-237ENST00000539504 SCTP09683 121 aa9.71□□□□□ -0.86
SYNE1-237ENST00000539504 FKBP2P26885 142 aaKnown RBP9.71□□□□□ -0.86
SYNE1-237ENST00000539504 RBM11P57052 281 aaKnown RBP9.71□□□□□ -0.86
SYNE1-237ENST00000539504 ZNF92Q03936 586 aa9.71□□□□□ -0.86
SYNE1-237ENST00000539504 TMEM211Q6ICI0 200 aa9.71□□□□□ -0.86
SYNE1-237ENST00000539504 SLC25A45Q8N413 288 aa9.71□□□□□ -0.86
SYNE1-237ENST00000539504 C14orf144Q96I85 54 aa9.71□□□□□ -0.86
SYNE1-237ENST00000539504 ZNF665Q9H7R5 613 aa9.71□□□□□ -0.86
SYNE1-237ENST00000539504 ELOA3CA0A087WX78 387 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-237ENST00000539504 LOC102725191A0A1B0GVB3 256 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 CEBPZOSA8MTT3 80 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 IZUMO4Q1ZYL8 232 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 CALHM1Q8IU99 346 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 NECAP1Q8NC96 275 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 ATP5SQ99766 215 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 RSG1Q9BU20 258 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 PRDM13Q9H4Q3 707 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 SPTBN5Q9NRC6 3674 aaKnown RBP9.7□□□□□ -0.86
SYNE1-237ENST00000539504 ZNF732B4DXR9 585 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 SERPINE2P07093 398 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 CD63P08962 238 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 SPINK2P20155 84 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 VDAC1P21796 283 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 CLEC12BQ2HXU8 276 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 OR8G5Q8NG78 346 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 GAB2Q9UQC2 676 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 IGLV3-12A0A075B6K2 115 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 A0A0J9YW62 118 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 IGHV3-9P01782 118 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 CCL3P10147 92 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 IAPPP10997 89 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 S100GP29377 79 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 TAS2R30P59541 319 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 ABHD5Q8WTS1 349 aa9.7□□□□□ -0.86
SYNE1-237ENST00000539504 CHCHD2Q9Y6H1 151 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-237ENST00000539504 DFFBO76075 338 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 MMP9P14780 707 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 ZNF16P17020 682 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-237ENST00000539504 DDTP30046 118 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 H3F3AP84243 136 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 BAXQ07812 192 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms