RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 NEK6Q9HC98 313 aa2.55□□□□□ -2
CD44-235ENST00000532339 AIG1Q9NVV5 245 aa2.55□□□□□ -2
CD44-235ENST00000532339 KCNIP1Q9NZI2 227 aa2.55□□□□□ -2
CD44-235ENST00000532339 CAB39Q9Y376 341 aaPredicted RBP2.55□□□□□ -2
CD44-235ENST00000532339 CACNG2Q9Y698 323 aa2.55□□□□□ -2
CD44-235ENST00000532339 FAT3Q8TDW7 4589 aa2.54□□□□□ -2
CD44-235ENST00000532339 C9JVG2 144 aa2.54□□□□□ -2
CD44-235ENST00000532339 KRTAP4-16G5E9R7 235 aaPredicted RBP2.54□□□□□ -2
CD44-235ENST00000532339 DLGAP1O14490 977 aa2.54□□□□□ -2
CD44-235ENST00000532339 AGPAT2O15120 278 aa2.54□□□□□ -2
CD44-235ENST00000532339 ME2P23368 584 aa2.54□□□□□ -2
CD44-235ENST00000532339 CMA1P23946 247 aa2.54□□□□□ -2
CD44-235ENST00000532339 IMPA1P29218 277 aa2.54□□□□□ -2
CD44-235ENST00000532339 ASIPP42127 132 aa2.54□□□□□ -2
CD44-235ENST00000532339 GLP1RP43220 463 aa2.54□□□□□ -2
CD44-235ENST00000532339 VDAC2P45880 294 aaPredicted RBP2.54□□□□□ -2
CD44-235ENST00000532339 NPBWR2P48146 333 aa2.54□□□□□ -2
CD44-235ENST00000532339 APOC4P55056 127 aa2.54□□□□□ -2
CD44-235ENST00000532339 TGFBIQ15582 683 aa2.54□□□□□ -2
CD44-235ENST00000532339 VPS26BQ4G0F5 336 aa2.54□□□□□ -2
CD44-235ENST00000532339 KHDRBS2Q5VWX1 349 aaKnown RBP2.54□□□□□ -2
CD44-235ENST00000532339 CTRB2Q6GPI1 263 aa2.54□□□□□ -2
CD44-235ENST00000532339 TMIGD1Q6UXZ0 262 aa2.54□□□□□ -2
CD44-235ENST00000532339 CYHR1Q6ZMK1 362 aa2.54□□□□□ -2
CD44-235ENST00000532339 KRT222Q8N1A0 295 aa2.54□□□□□ -2
CD44-235ENST00000532339 ZNF645Q8N7E2 425 aa2.54□□□□□ -2
CD44-235ENST00000532339 ZNF615Q8N8J6 731 aa2.54□□□□□ -2
CD44-235ENST00000532339 DOK4Q8TEW6 326 aa2.54□□□□□ -2
CD44-235ENST00000532339 ACOT11Q8WXI4 607 aaPredicted RBP2.54□□□□□ -2
CD44-235ENST00000532339 CCL17Q92583 94 aa2.54□□□□□ -2
CD44-235ENST00000532339 ZNF75CPQ92670 426 aaPredicted RBP2.54□□□□□ -2
CD44-235ENST00000532339 ARPC1AQ92747 370 aa2.54□□□□□ -2
CD44-235ENST00000532339 SLC38A4Q969I6 547 aa2.54□□□□□ -2
CD44-235ENST00000532339 CCDC126Q96EE4 140 aa2.54□□□□□ -2
CD44-235ENST00000532339 TMEM59Q9BXS4 323 aa2.54□□□□□ -2
CD44-235ENST00000532339 AICDAQ9GZX7 198 aa2.54□□□□□ -2
CD44-235ENST00000532339 GBA3Q9H227 469 aa2.54□□□□□ -2
CD44-235ENST00000532339 TMEM185BQ9H7F4 350 aa2.54□□□□□ -2
CD44-235ENST00000532339 NANOGQ9H9S0 305 aa2.54□□□□□ -2
CD44-235ENST00000532339 LYRM4Q9HD34 91 aa2.54□□□□□ -2
CD44-235ENST00000532339 SDHAF3Q9NRP4 125 aa2.54□□□□□ -2
CD44-235ENST00000532339 MED11Q9P086 117 aa2.54□□□□□ -2
CD44-235ENST00000532339 N6AMT1Q9Y5N5 214 aa2.54□□□□□ -2
CD44-235ENST00000532339 DSPPQ9NZW4 1301 aa2.53□□□□□ -2
CD44-235ENST00000532339 A0A0G2JN53 185 aa2.53□□□□□ -2
CD44-235ENST00000532339 FAM231BA6NCW3 169 aa2.53□□□□□ -2
CD44-235ENST00000532339 C17orf51A8MQB3 221 aa2.53□□□□□ -2
CD44-235ENST00000532339 BTNL10A8MVZ5 291 aa2.53□□□□□ -2
CD44-235ENST00000532339 C12orf77C9JDV5 145 aa2.53□□□□□ -2
CD44-235ENST00000532339 ERI3O43414 337 aaKnown RBP2.53□□□□□ -2
CD44-235ENST00000532339 SYNGR1O43759 233 aa2.53□□□□□ -2
CD44-235ENST00000532339 EEDO75530 441 aaKnown RBP2.53□□□□□ -2
CD44-235ENST00000532339 MMP23AO75900 390 aa2.53□□□□□ -2
CD44-235ENST00000532339 OR2J3O76001 311 aa2.53□□□□□ -2
CD44-235ENST00000532339 OTCP00480 354 aa2.53□□□□□ -2
CD44-235ENST00000532339 C2P06681 752 aa2.53□□□□□ -2
CD44-235ENST00000532339 ANXA8P13928 327 aa2.53□□□□□ -2
CD44-235ENST00000532339 ZNF14P17017 642 aaPredicted RBP2.53□□□□□ -2
CD44-235ENST00000532339 MSNP26038 577 aaKnown RBP2.53□□□□□ -2
CD44-235ENST00000532339 OTX1P32242 354 aaPredicted RBP2.53□□□□□ -2
CD44-235ENST00000532339 IFNA8P32881 189 aa2.53□□□□□ -2
CD44-235ENST00000532339 BTCP35070 178 aa2.53□□□□□ -2
CD44-235ENST00000532339 GLRXP35754 106 aa2.53□□□□□ -2
CD44-235ENST00000532339 CFHR2P36980 270 aa2.53□□□□□ -2
CD44-235ENST00000532339 MYCNOSP40205 109 aa2.53□□□□□ -2
CD44-235ENST00000532339 SYKP43405 635 aa2.53□□□□□ -2
CD44-235ENST00000532339 TAS2R19P59542 299 aa2.53□□□□□ -2
CD44-235ENST00000532339 ERVK-25P63136 954 aa2.53□□□□□ -2
CD44-235ENST00000532339 NNATQ16517 81 aa2.53□□□□□ -2
CD44-235ENST00000532339 MRPL23Q16540 153 aaKnown RBP2.53□□□□□ -2
CD44-235ENST00000532339 EXOC3L4Q17RC7 722 aa2.53□□□□□ -2
CD44-235ENST00000532339 PLPPR5Q32ZL2 321 aa2.53□□□□□ -2
CD44-235ENST00000532339 LELP1Q5T871 98 aa2.53□□□□□ -2
CD44-235ENST00000532339 ANXA8L1Q5VT79 327 aa2.53□□□□□ -2
CD44-235ENST00000532339 PTRHD1Q6GMV3 140 aaKnown RBP2.53□□□□□ -2
CD44-235ENST00000532339 ZNF836Q6ZNA1 936 aa2.53□□□□□ -2
CD44-235ENST00000532339 OFCC1Q8IZS5 231 aa2.53□□□□□ -2
CD44-235ENST00000532339 OR4C5Q8NGB2 326 aa2.53□□□□□ -2
CD44-235ENST00000532339 GPR151Q8TDV0 419 aa2.53□□□□□ -2
CD44-235ENST00000532339 ACMSDQ8TDX5 336 aa2.53□□□□□ -2
CD44-235ENST00000532339 DCUN1D4Q92564 292 aa2.53□□□□□ -2
CD44-235ENST00000532339 MYDGFQ969H8 173 aa2.53□□□□□ -2
CD44-235ENST00000532339 MCUR1Q96AQ8 359 aa2.53□□□□□ -2
CD44-235ENST00000532339 MS4A6EQ96DS6 147 aa2.53□□□□□ -2
CD44-235ENST00000532339 FCRL1Q96LA6 429 aa2.53□□□□□ -2
CD44-235ENST00000532339 P2RX4Q99571 388 aa2.53□□□□□ -2
CD44-235ENST00000532339 GPR21Q99679 349 aa2.53□□□□□ -2
CD44-235ENST00000532339 SH3GL1Q99961 368 aa2.53□□□□□ -2
CD44-235ENST00000532339 TMEM246Q9BRR3 403 aa2.53□□□□□ -2
CD44-235ENST00000532339 ANP32EQ9BTT0 268 aa2.53□□□□□ -2
CD44-235ENST00000532339 POLR2J2Q9GZM3 115 aaKnown RBP2.53□□□□□ -2
CD44-235ENST00000532339 POLR2J3Q9H1A7 115 aaKnown RBP2.53□□□□□ -2
CD44-235ENST00000532339 NCOR1P1Q9H4R4 102 aa2.53□□□□□ -2
CD44-235ENST00000532339 GEMIN7Q9H840 131 aaKnown RBP2.53□□□□□ -2
CD44-235ENST00000532339 SLC25A22Q9H936 323 aa2.53□□□□□ -2
CD44-235ENST00000532339 NOX3Q9HBY0 568 aa2.53□□□□□ -2
CD44-235ENST00000532339 TREX1Q9NSU2 369 aa2.53□□□□□ -2
CD44-235ENST00000532339 PARVAQ9NVD7 372 aa2.53□□□□□ -2
CD44-235ENST00000532339 DDX18Q9NVP1 670 aaKnown RBP2.53□□□□□ -2
CD44-235ENST00000532339 NLE1Q9NVX2 485 aaPredicted RBP2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms