RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 SLC25A45Q8N413 288 aa4.13□□□□□ -1.75
NUP54-215ENST00000514313 RBPMSQ93062 196 aaKnown RBP4.13□□□□□ -1.75
NUP54-215ENST00000514313 OLFM3Q96PB7 478 aa4.13□□□□□ -1.75
NUP54-215ENST00000514313 SCRT1Q9BWW7 348 aa4.13□□□□□ -1.75
NUP54-215ENST00000514313 WDR54Q9H977 334 aa4.13□□□□□ -1.75
NUP54-215ENST00000514313 DHCR7Q9UBM7 475 aaKnown RBP4.13□□□□□ -1.75
NUP54-215ENST00000514313 HMGXB4Q9UGU5 601 aa4.13□□□□□ -1.75
NUP54-215ENST00000514313 BTRCQ9Y297 605 aa4.13□□□□□ -1.75
NUP54-215ENST00000514313 TBL2Q9Y4P3 447 aaKnown RBP4.13□□□□□ -1.75
NUP54-215ENST00000514313 GMNCA6NCL1 334 aa4.12□□□□□ -1.75
NUP54-215ENST00000514313 EFCAB9A8MZ26 197 aa4.12□□□□□ -1.75
NUP54-215ENST00000514313 KCNK2O95069 426 aa4.12□□□□□ -1.75
NUP54-215ENST00000514313 PET100P0DJ07 73 aa4.12□□□□□ -1.75
NUP54-215ENST00000514313 AKR1C4P17516 323 aa4.12□□□□□ -1.75
NUP54-215ENST00000514313 PVALBP20472 110 aaPredicted RBP4.12□□□□□ -1.75
NUP54-215ENST00000514313 CD40LGP29965 261 aa4.12□□□□□ -1.75
NUP54-215ENST00000514313 C1QTNF8P60827 252 aa4.12□□□□□ -1.75
NUP54-215ENST00000514313 GOLGA7BQ2TAP0 167 aa4.12□□□□□ -1.75
NUP54-215ENST00000514313 MRPL2Q5T653 305 aaKnown RBP4.12□□□□□ -1.75
NUP54-215ENST00000514313 KHDRBS2Q5VWX1 349 aaKnown RBP4.12□□□□□ -1.75
NUP54-215ENST00000514313 CLEC20AQ6ZU45 233 aa4.12□□□□□ -1.75
NUP54-215ENST00000514313 LFNGQ8NES3 379 aa4.12□□□□□ -1.75
NUP54-215ENST00000514313 CASTOR1Q8WTX7 329 aa4.12□□□□□ -1.75
NUP54-215ENST00000514313 PPWD1Q96BP3 646 aaKnown RBP4.12□□□□□ -1.75
NUP54-215ENST00000514313 PRSS27Q9BQR3 290 aa4.12□□□□□ -1.75
NUP54-215ENST00000514313 TRIP11Q15643 1979 aa4.12□□□□□ -1.75
NUP54-215ENST00000514313 BRWD3Q6RI45 1802 aa4.11□□□□□ -1.75
NUP54-215ENST00000514313 ITGB1BP1O14713 200 aa4.11□□□□□ -1.75
NUP54-215ENST00000514313 OCMP0CE72 109 aaPredicted RBP4.11□□□□□ -1.75
NUP54-215ENST00000514313 GTF2F2P13984 249 aa4.11□□□□□ -1.75
NUP54-215ENST00000514313 ZNF14P17017 642 aaPredicted RBP4.11□□□□□ -1.75
NUP54-215ENST00000514313 ZNF83P51522 516 aa4.11□□□□□ -1.75
NUP54-215ENST00000514313 DLX6P56179 175 aa4.11□□□□□ -1.75
NUP54-215ENST00000514313 COTL1Q14019 142 aa4.11□□□□□ -1.75
NUP54-215ENST00000514313 KRTAP13-2Q52LG2 175 aa4.11□□□□□ -1.75
NUP54-215ENST00000514313 SGPP2Q8IWX5 399 aa4.11□□□□□ -1.75
NUP54-215ENST00000514313 FAM9CQ8IZT9 166 aa4.11□□□□□ -1.75
NUP54-215ENST00000514313 SEC22CQ9BRL7 303 aa4.11□□□□□ -1.75
NUP54-215ENST00000514313 VSIRQ9H7M9 311 aa4.11□□□□□ -1.75
NUP54-215ENST00000514313 INIPQ9NRY2 104 aa4.11□□□□□ -1.75
NUP54-215ENST00000514313 COMMD9Q9P000 198 aa4.11□□□□□ -1.75
NUP54-215ENST00000514313 MARCOQ9UEW3 520 aaPredicted RBP4.11□□□□□ -1.75
NUP54-215ENST00000514313 ATP6V1DQ9Y5K8 247 aa4.11□□□□□ -1.75
NUP54-215ENST00000514313 NOS1P29475 1434 aa4.11□□□□□ -1.75
NUP54-215ENST00000514313 C1orf232A0A0U1RR37 186 aa4.1□□□□□ -1.75
NUP54-215ENST00000514313 FGF16O43320 207 aa4.1□□□□□ -1.75
NUP54-215ENST00000514313 SYNGR1O43759 233 aa4.1□□□□□ -1.75
NUP54-215ENST00000514313 UGT2B11O75310 529 aa4.1□□□□□ -1.75
NUP54-215ENST00000514313 ATF1P18846 271 aa4.1□□□□□ -1.75
NUP54-215ENST00000514313 CBX5P45973 191 aa4.1□□□□□ -1.75
NUP54-215ENST00000514313 DYNLL1P63167 89 aaKnown RBP4.1□□□□□ -1.75
NUP54-215ENST00000514313 ELP2Q6IA86 826 aa4.1□□□□□ -1.75
NUP54-215ENST00000514313 IGFL3Q6UXB1 125 aa4.1□□□□□ -1.75
NUP54-215ENST00000514313 OLIG3Q7RTU3 272 aa4.1□□□□□ -1.75
NUP54-215ENST00000514313 FAM19A3Q7Z5A8 133 aa4.1□□□□□ -1.75
NUP54-215ENST00000514313 FUNDC1Q8IVP5 155 aa4.1□□□□□ -1.75
NUP54-215ENST00000514313 DMAC2Q9NW81 257 aa4.1□□□□□ -1.75
NUP54-215ENST00000514313 POMPQ9Y244 141 aa4.1□□□□□ -1.75
NUP54-215ENST00000514313 NOSIPQ9Y314 301 aaKnown RBP4.1□□□□□ -1.75
NUP54-215ENST00000514313 IGHV3-43A0A0B4J1X8 118 aa4.09□□□□□ -1.75
NUP54-215ENST00000514313 GOLGA6L10A6NI86 522 aa4.09□□□□□ -1.75
NUP54-215ENST00000514313 IGLL5B9A064 214 aa4.09□□□□□ -1.75
NUP54-215ENST00000514313 KLRC4-KLRK1H3BQV0 150 aa4.09□□□□□ -1.75
NUP54-215ENST00000514313 ZNF3P17036 446 aa4.09□□□□□ -1.75
NUP54-215ENST00000514313 CELP19835 753 aa4.09□□□□□ -1.75
NUP54-215ENST00000514313 ZNF235Q14590 738 aa4.09□□□□□ -1.75
NUP54-215ENST00000514313 XKRXQ6PP77 449 aa4.09□□□□□ -1.75
NUP54-215ENST00000514313 PLEKHG7Q6ZR37 379 aa4.09□□□□□ -1.75
NUP54-215ENST00000514313 BLIDQ8IZY5 108 aa4.09□□□□□ -1.75
NUP54-215ENST00000514313 MUC15Q8N387 334 aa4.09□□□□□ -1.75
NUP54-215ENST00000514313 YIPF5Q969M3 257 aa4.09□□□□□ -1.75
NUP54-215ENST00000514313 EBPLQ9BY08 206 aa4.09□□□□□ -1.75
NUP54-215ENST00000514313 PLA2G12AQ9BZM1 189 aa4.09□□□□□ -1.75
NUP54-215ENST00000514313 IMP3Q9NV31 184 aaKnown RBP4.09□□□□□ -1.75
NUP54-215ENST00000514313 FSTL3O95633 263 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 ORM1P02763 201 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 HLA-DMAP28067 261 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 FAM3AP98173 230 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 FMODQ06828 376 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 EXOC3L4Q17RC7 722 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 TMEM69Q5SWH9 247 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 LAIR2Q6ISS4 152 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 KRTAP5-1Q6L8H4 278 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 FAM45BPQ6NSW5 357 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 IGFL1Q6UW32 110 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 AMN1Q8IY45 258 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 ZFP82Q8N141 532 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 OR5L1Q8NGL2 311 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 RAD50Q92878 1312 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 GPR22Q99680 433 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 DCUN1D5Q9BTE7 237 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 HDHD2Q9H0R4 259 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 NAGKQ9UJ70 344 aa4.08□□□□□ -1.76
NUP54-215ENST00000514313 TICRRQ7Z2Z1 1910 aa4.07□□□□□ -1.76
NUP54-215ENST00000514313 PLXNB3Q9ULL4 1909 aa4.07□□□□□ -1.76
NUP54-215ENST00000514313 SCN4AP35499 1836 aa4.07□□□□□ -1.76
NUP54-215ENST00000514313 POLR3AO14802 1390 aaPredicted RBP4.07□□□□□ -1.76
NUP54-215ENST00000514313 IGHV1-45A0A0A0MS14 117 aa4.07□□□□□ -1.76
NUP54-215ENST00000514313 F5H5K5 113 aa4.07□□□□□ -1.76
NUP54-215ENST00000514313 PHYHO14832 338 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms