RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 UBAC2Q8NBM4 344 aa13.77□□□□□ -0.21
SQSTM1-213ENST00000510187 NRIP2Q9BQI9 281 aa13.77□□□□□ -0.21
SQSTM1-213ENST00000510187 RHOFQ9HBH0 211 aa13.77□□□□□ -0.21
SQSTM1-213ENST00000510187 SLC7A10Q9NS82 523 aa13.77□□□□□ -0.21
SQSTM1-213ENST00000510187 FBXL17Q9UF56 701 aa13.77□□□□□ -0.21
SQSTM1-213ENST00000510187 TINAGQ9UJW2 476 aa13.77□□□□□ -0.21
SQSTM1-213ENST00000510187 NSG2Q9Y328 171 aa13.77□□□□□ -0.21
SQSTM1-213ENST00000510187 IGKV1-12A0A0C4DH73 117 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 FAM90A10PA6NDY2 464 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 FAM90A18PA6NE21 464 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 FAM90A16PA6NEW6 464 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 FAM90A20PA6NIJ5 464 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 FAM90A8PA6NJQ4 464 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 FAM90A7PA6NKC0 464 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 FAM90A22PA8MWA6 464 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 FAM90A12PA8MX19 464 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 FAM90A5PA8MXJ8 464 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 FAM90A23PA8MXZ1 464 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 MED6O75586 246 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 FARS2O95363 451 aaKnown RBP13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 IGKV1D-12P01611 117 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 FAM90A15PP0C7V4 464 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 FAM90A13PP0C7W8 464 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 FAM90A14PP0C7W9 464 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 FAM90A24PP0C7X0 464 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 GLP1RP43220 463 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 ARHGDIBP52566 201 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 MALLQ13021 153 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 GUSBP1Q15486 140 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 HAGHLQ6PII5 290 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 BTNL8Q6UX41 500 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 FBXL14Q8N1E6 418 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 CCDC71LQ8N9Z2 235 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 RTN4IP1Q8WWV3 396 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 MOB3AQ96BX8 217 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 SYT3Q9BQG1 590 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 C1QTNF5Q9BXJ0 243 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 LINC00470Q9BZP3 86 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 ARV1Q9H2C2 271 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 LIME1Q9H400 295 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 AMDHD2Q9Y303 409 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 PRELID3BQ9Y3B1 194 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 NBEAQ8NFP9 2946 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 GEMIN2O14893 280 aaKnown RBP13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 LPAR6P43657 344 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 AKR1C2P52895 323 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 F2RL1P55085 397 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 RBM11P57052 281 aaKnown RBP13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 ZNF92Q03936 586 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 AKR1C1Q04828 323 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 FOXF2Q12947 444 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 GPR157Q5UAW9 335 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 PLCXD3Q63HM9 321 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 LIAT1Q6ZQX7 453 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 LGI3Q8N145 548 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 Q8NFD4 153 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 C18orf12Q96KH6 178 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 RCC2Q9P258 522 aaKnown RBP13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 SH3BGRL2Q9UJC5 107 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 STARD10Q9Y365 291 aa13.76□□□□□ -0.21
SQSTM1-213ENST00000510187 CACNA1BQ00975 2339 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 MED12LQ86YW9 2145 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 PRSS44E7EML9 344 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 ZNF587BE7ETH6 402 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 NDUFA2O43678 99 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 MMP7P09237 267 aaPredicted RBP13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 OPRM1P35372 400 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 TIMP3P35625 211 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 KIR2DL2P43627 348 aaPredicted RBP13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 TMEM33P57088 247 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 SRSF3P84103 164 aaKnown RBP13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 SRSF7Q16629 238 aaKnown RBP eCLIP13.75□□□□□ -0.214e-8■□□□□ 9.2
SQSTM1-213ENST00000510187 HFEQ30201 348 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 PIGYQ3MUY2 71 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 SLC22A25Q6T423 547 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 Q6ZS49 121 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 COMMD1Q8N668 190 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 ST6GALNAC3Q8NDV1 305 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 LYPD6BQ8NI32 183 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 TOMM40LQ969M1 308 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 TLNRD1Q9H1K6 362 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 HRH4Q9H3N8 390 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 PRSS50Q9UI38 385 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 FBXO9Q9UK97 447 aaPredicted RBP13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 ST3GAL6Q9Y274 331 aa13.75□□□□□ -0.21
SQSTM1-213ENST00000510187 H7C2Y5 167 aa13.74□□□□□ -0.21
SQSTM1-213ENST00000510187 GPR137BO60478 399 aa13.74□□□□□ -0.21
SQSTM1-213ENST00000510187 CD5P06127 495 aa13.74□□□□□ -0.21
SQSTM1-213ENST00000510187 HEXAP06865 529 aa13.74□□□□□ -0.21
SQSTM1-213ENST00000510187 OR5AC1P0C628 307 aa13.74□□□□□ -0.21
SQSTM1-213ENST00000510187 MUC1P15941 1255 aaPredicted RBP13.74□□□□□ -0.21
SQSTM1-213ENST00000510187 RCC1P18754 421 aaPredicted RBP13.74□□□□□ -0.21
SQSTM1-213ENST00000510187 FUT3P21217 361 aa13.74□□□□□ -0.21
SQSTM1-213ENST00000510187 DUSP1P28562 367 aa13.74□□□□□ -0.21
SQSTM1-213ENST00000510187 SRPXP78539 464 aa13.74□□□□□ -0.21
SQSTM1-213ENST00000510187 IL13RA2Q14627 380 aa13.74□□□□□ -0.21
SQSTM1-213ENST00000510187 COLCA1Q6ZS62 124 aa13.74□□□□□ -0.21
SQSTM1-213ENST00000510187 FOXRED2Q8IWF2 684 aa13.74□□□□□ -0.21
SQSTM1-213ENST00000510187 SKA3Q8IX90 412 aa13.74□□□□□ -0.21
SQSTM1-213ENST00000510187 FAM185AQ8N0U4 392 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms