RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 ZDHHC21Q8IVQ6 265 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 MICU2Q8IYU8 434 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 ENTHD1Q8IYW4 607 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 PGAM4Q8N0Y7 254 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 OR6V1Q8N148 313 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 RNF148Q8N7C7 305 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 STPG4Q8N801 248 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 MAPKAPK5-AS1Q8N8E1 139 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 OR1M1Q8NGA1 313 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 OR11H6Q8NGC7 330 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 OR10AD1Q8NGE0 317 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 OR4X2Q8NGF9 303 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 OR52L1Q8NGH7 329 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 OR4D11Q8NGI4 311 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 OR5A2Q8NGI9 324 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 OR13D1Q8NGV5 346 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 ZNF420Q8TAQ5 688 aaPredicted RBP3.08□□□□□ -1.92
USP54-217ENST00000498213 MCUR1Q96AQ8 359 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 CCDC124Q96CT7 223 aaKnown RBP3.08□□□□□ -1.92
USP54-217ENST00000498213 C10orf35Q96D05 121 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 CMTM5Q96DZ9 223 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 RSRC1Q96IZ7 334 aaKnown RBP3.08□□□□□ -1.92
USP54-217ENST00000498213 Q96M85 177 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 RAB3IPQ96QF0 476 aaPredicted RBP3.08□□□□□ -1.92
USP54-217ENST00000498213 WFDC6Q9BQY6 131 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 CHCHD6Q9BRQ6 235 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 TEX12Q9BXU0 123 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 GON7Q9BXV9 100 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 GORASP2Q9H8Y8 452 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 EDA2RQ9HAV5 297 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 ABCB10Q9NRK6 738 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 C1orf123Q9NWV4 160 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 CMTM6Q9NX76 183 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 NDE1Q9NXR1 346 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 IL20Q9NYY1 176 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 PTTG3PQ9NZH4 202 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 RHCGQ9UBD6 479 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 CTSZQ9UBR2 303 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 GLS2Q9UI32 602 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 TSSC4Q9Y5U2 329 aaPredicted RBP3.08□□□□□ -1.92
USP54-217ENST00000498213 A0A0U1RQV5 110 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 hCG_1807616A0A1W2PRN6 198 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 MEIOCA2RUB1 952 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 FUOMA2VDF0 154 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 ARRDC5A6NEK1 342 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 F5H5K5 113 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 H0YAE9 185 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 CDC42EP2O14613 210 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 FFAR1O14842 300 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 ARPC1BO15143 372 aaKnown RBP3.07□□□□□ -1.92
USP54-217ENST00000498213 OR10H3O60404 316 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 ZNF254O75437 659 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 IFNGP01579 166 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 OPN1SWP03999 348 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 RBMY1CP0DJD4 496 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 PGA5P0DJD9 388 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 ZNF26P17031 533 aaPredicted RBP3.07□□□□□ -1.92
USP54-217ENST00000498213 CA6P23280 308 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 FMO3P31513 532 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 BRS3P32247 399 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 CEACAM3P40198 252 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 OR12D2P58182 307 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 CDC42P60953 191 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 ACTR3P61158 418 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 ARF6P62330 175 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 TSPAN31Q12999 210 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 TAF13Q15543 124 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 RSPO1Q2MKA7 263 aaPredicted RBP3.07□□□□□ -1.92
USP54-217ENST00000498213 WDR38Q5JTN6 314 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 ZNF770Q6IQ21 691 aaPredicted RBP3.07□□□□□ -1.92
USP54-217ENST00000498213 LCN8Q6JVE9 175 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 LYPD2Q6UXB3 125 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 CFAP77Q6ZQR2 320 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 ZNF573Q86YE8 665 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 RBM45Q8IUH3 476 aaKnown RBP3.07□□□□□ -1.92
USP54-217ENST00000498213 LINC00346Q8IVM7 164 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 Q8IYB0 196 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 ARHGAP24Q8N264 748 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 ZNF485Q8NCK3 441 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 OR13C2Q8NGS9 318 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 ANGPTL6Q8NI99 470 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 ZNF596Q8TC21 504 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 FANK1Q8TC84 345 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 RNF133Q8WVZ7 376 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 CAPSLQ8WWF8 208 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 DNAJC9Q8WXX5 260 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 SLCO4A1Q96BD0 722 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 TPD52L3Q96J77 140 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 CDRT15Q96T59 188 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 MYCBPQ99417 103 aaPredicted RBP3.07□□□□□ -1.92
USP54-217ENST00000498213 SSX3Q99909 188 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 NRIP2Q9BQI9 281 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 COPS4Q9BT78 406 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 PPA2Q9H2U2 334 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 NCOR1P1Q9H4R4 102 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 MOB1AQ9H8S9 216 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 EFCAB1Q9HAE3 211 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 INPP5EQ9NRR6 644 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 DCAF16Q9NXF7 216 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 ADA2Q9NZK5 511 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms