RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 A8MXK9 166 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 HSPB6O14558 160 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 DUX4L2P0CJ85 424 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 DUX4L3P0CJ86 424 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 DUX4L4P0CJ87 422 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 DUX4L5P0CJ88 424 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 DUX4L6P0CJ89 424 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 DUX4L7P0CJ90 424 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 SELLP14151 372 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 NDUFB7P17568 137 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 TAS2R20P59543 309 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 PITPNAQ00169 270 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 ZNF260Q3ZCT1 412 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 CDNFQ49AH0 187 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 SPANXN2Q5MJ10 180 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 CD276Q5ZPR3 534 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 WDR25Q64LD2 544 aaPredicted RBP11.53□□□□□ -0.56
C9orf3-221ENST00000489562 SLC35E4Q6ICL7 350 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 DUX4L9Q6RFH8 374 aaPredicted RBP11.53□□□□□ -0.56
C9orf3-221ENST00000489562 ZNF841Q6ZN19 808 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 BPIFB2Q8N4F0 458 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 SULT4A1Q9BR01 284 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 FAAP24Q9BTP7 215 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 DUX4Q9UBX2 424 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.52□□□□□ -0.573e-7■□□□□ 10
C9orf3-221ENST00000489562 TMEM30CPA0ZSE6 113 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 UBE2QL1A1L167 161 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 FOXH1O75593 365 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 MELTFP08582 738 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 CD3GP09693 182 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 GNB3P16520 340 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 PTBP1P26599 531 aaKnown RBP eCLIP11.52□□□□□ -0.57
C9orf3-221ENST00000489562 ETV6P41212 452 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 P2RX3P56373 397 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 MEF2CQ06413 473 aaPredicted RBP11.52□□□□□ -0.57
C9orf3-221ENST00000489562 ARFRP1Q13795 201 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 ATXN7L3Q14CW9 347 aaPredicted RBP11.52□□□□□ -0.57
C9orf3-221ENST00000489562 KRBOX4Q5JUW0 171 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 HACD4Q5VWC8 232 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 RSBN1Q5VWQ0 802 aaPredicted RBP11.52□□□□□ -0.57
C9orf3-221ENST00000489562 ZNF497Q6ZNH5 498 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 CCDC190Q86UF4 302 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 WFDC11Q8NEX6 87 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 DMRTB1Q96MA1 342 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 CMSS1Q9BQ75 279 aaKnown RBP11.52□□□□□ -0.57
C9orf3-221ENST00000489562 AUNIPQ9H7T9 357 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 C12orf4Q9NQ89 552 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 KCNK7Q9Y2U2 307 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 MYO9AB2RTY4 2548 aa11.52□□□□□ -0.57
C9orf3-221ENST00000489562 ABCA2Q9BZC7 2435 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 MED13LQ71F56 2210 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 WNK2Q9Y3S1 2297 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 TRBV6-6A0A0A6YYG2 114 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 TMEM235A6NFC5 223 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 FABP12A6NFH5 140 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 RNF223E7ERA6 249 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 EDDM3BP56851 147 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 GNG2P59768 71 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 MRPS10P82664 201 aaKnown RBP11.51□□□□□ -0.57
C9orf3-221ENST00000489562 EDDM3AQ14507 147 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 PYHIN1Q6K0P9 492 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 BRICD5Q6PL45 260 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 MOB1BQ7L9L4 216 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 IZUMO1Q8IYV9 350 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 GAPTQ8N292 157 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 C8orf46Q8TAG6 207 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 PLPPR1Q8TBJ4 325 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 H1FXQ92522 213 aaKnown RBP11.51□□□□□ -0.57
C9orf3-221ENST00000489562 COQ2Q96H96 371 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 C1orf159Q96HA4 380 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 DCTN5Q9BTE1 182 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 ZMAT3Q9HA38 289 aaKnown RBP11.51□□□□□ -0.57
C9orf3-221ENST00000489562 OR6C3Q9NZP0 311 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 AK3Q9UIJ7 227 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 ITGB1BP2Q9UKP3 347 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 MGAT4AQ9UM21 535 aa11.51□□□□□ -0.57
C9orf3-221ENST00000489562 MRPS7Q9Y2R9 242 aaKnown RBP11.51□□□□□ -0.57
C9orf3-221ENST00000489562 POLR3KQ9Y2Y1 108 aaPredicted RBP11.51□□□□□ -0.57
C9orf3-221ENST00000489562 ARHGAP32A7KAX9 2087 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 A0A1W2PPH5 198 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 hADV38S2A0JD32 116 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 ODAMA1E959 279 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 SULT1C2O00338 296 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 FCN3O75636 299 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 NAPSAO96009 420 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 HLA-DQB1P01920 261 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 PRSS3P35030 304 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 CBX5P45973 191 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 SEC61A1P61619 476 aaKnown RBP11.5□□□□□ -0.57
C9orf3-221ENST00000489562 RPL31P62899 125 aaKnown RBP11.5□□□□□ -0.57
C9orf3-221ENST00000489562 ZNF45Q02386 682 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 AESQ08117 197 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 IL18Q14116 193 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 TRAT1Q6PIZ9 186 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 FAM131AQ6UXB0 335 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 BTN2A1Q7KYR7 527 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 S100ZQ8WXG8 99 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 SOSTQ9BQB4 213 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 SCPEP1Q9HB40 452 aa11.5□□□□□ -0.57
C9orf3-221ENST00000489562 CHMP1AQ9HD42 196 aaPredicted RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms