RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 CDCA4Q9BXL8 241 aa17.11■□□□□ 0.33
LIME1-207ENST00000489212 GAL3ST2Q9H3Q3 398 aa17.11■□□□□ 0.33
LIME1-207ENST00000489212 C16orf95Q9H693 158 aa17.11■□□□□ 0.33
LIME1-207ENST00000489212 TAS2R3Q9NYW6 316 aa17.11■□□□□ 0.33
LIME1-207ENST00000489212 CKLFQ9UBR5 152 aa17.11■□□□□ 0.33
LIME1-207ENST00000489212 LSM2Q9Y333 95 aaKnown RBP17.11■□□□□ 0.33
LIME1-207ENST00000489212 A0A1W2PP11 408 aa17.1■□□□□ 0.33
LIME1-207ENST00000489212 VGLL3A8MV65 326 aa17.1■□□□□ 0.33
LIME1-207ENST00000489212 JUNBP17275 347 aaPredicted RBP17.1■□□□□ 0.33
LIME1-207ENST00000489212 MYF6P23409 242 aa17.1■□□□□ 0.33
LIME1-207ENST00000489212 RAB13P51153 203 aa17.1■□□□□ 0.33
LIME1-207ENST00000489212 PROK1P58294 105 aa17.1■□□□□ 0.33
LIME1-207ENST00000489212 BDH1Q02338 343 aa17.1■□□□□ 0.33
LIME1-207ENST00000489212 SSX2Q16385 188 aa17.1■□□□□ 0.33
LIME1-207ENST00000489212 C17orf58Q2M2W7 97 aa17.1■□□□□ 0.33
LIME1-207ENST00000489212 MALSU1Q96EH3 234 aa17.1■□□□□ 0.33
LIME1-207ENST00000489212 CLEC7AQ9BXN2 247 aa17.1■□□□□ 0.33
LIME1-207ENST00000489212 FOXJ3Q9UPW0 622 aa17.1■□□□□ 0.33
LIME1-207ENST00000489212 ST3GAL6Q9Y274 331 aa17.1■□□□□ 0.33
LIME1-207ENST00000489212 FAM172BPA6NC97 362 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 CHST1O43916 411 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 CGB3P0DN86 165 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 CGB7P0DN87 165 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 SERPINA2P20848 420 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 RBM11P57052 281 aaKnown RBP17.09■□□□□ 0.33
LIME1-207ENST00000489212 SLC35A2P78381 396 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 INSL4Q14641 139 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 IRF3Q14653 427 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 FAM189A2Q15884 450 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 NHLRC3Q5JS37 347 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 PRR31Q5SQ13 230 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 UTF1Q5T230 341 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 SLC35E4Q6ICL7 350 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 LYPD6Q86Y78 171 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 OSR2Q8N2R0 312 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 OR4P4Q8NGL7 312 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 PLPPR1Q8TBJ4 325 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 MYDGFQ969H8 173 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 MUL1Q969V5 352 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 FOXRED1Q96CU9 486 aaPredicted RBP17.09■□□□□ 0.33
LIME1-207ENST00000489212 MND1Q9BWT6 205 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 ANKRD60Q9BZ19 345 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 SCN3BQ9NY72 215 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 KIF25Q9UIL4 384 aa17.09■□□□□ 0.33
LIME1-207ENST00000489212 WNK1Q9H4A3 2382 aa17.08■□□□□ 0.33
LIME1-207ENST00000489212 GEMIN2O14893 280 aaKnown RBP17.08■□□□□ 0.32
LIME1-207ENST00000489212 MAS1P04201 325 aa17.08■□□□□ 0.32
LIME1-207ENST00000489212 SLC22A6Q4U2R8 563 aa17.08■□□□□ 0.32
LIME1-207ENST00000489212 MINOS1Q5TGZ0 78 aa17.08■□□□□ 0.32
LIME1-207ENST00000489212 RSBN1Q5VWQ0 802 aaPredicted RBP17.08■□□□□ 0.32
LIME1-207ENST00000489212 ABHD12Q8N2K0 398 aa17.08■□□□□ 0.32
LIME1-207ENST00000489212 OR13A1Q8NGR1 328 aa17.08■□□□□ 0.32
LIME1-207ENST00000489212 CITED1Q99966 193 aa17.08■□□□□ 0.32
LIME1-207ENST00000489212 ZNF696Q9H7X3 374 aa17.08■□□□□ 0.32
LIME1-207ENST00000489212 IFT22Q9H7X7 185 aa17.08■□□□□ 0.32
LIME1-207ENST00000489212 HILPDAQ9Y5L2 63 aa17.08■□□□□ 0.32
LIME1-207ENST00000489212 MINOS1-NBL1R4GNA1 71 aa17.08■□□□□ 0.32
LIME1-207ENST00000489212 VWFP04275 2813 aa17.08■□□□□ 0.32
LIME1-207ENST00000489212 MEIKINA0A087WXM9 373 aa17.07■□□□□ 0.32
LIME1-207ENST00000489212 CSTBP04080 98 aaKnown RBP17.07■□□□□ 0.32
LIME1-207ENST00000489212 GP2P55259 537 aaKnown RBP17.07■□□□□ 0.32
LIME1-207ENST00000489212 CCBE1Q6UXH8 406 aaPredicted RBP17.07■□□□□ 0.32
LIME1-207ENST00000489212 JAGN1Q8N5M9 183 aa17.07■□□□□ 0.32
LIME1-207ENST00000489212 SUMF2Q8NBJ7 301 aa17.07■□□□□ 0.32
LIME1-207ENST00000489212 S100A13Q99584 98 aa17.07■□□□□ 0.32
LIME1-207ENST00000489212 DPCDQ9BVM2 203 aaPredicted RBP17.07■□□□□ 0.32
LIME1-207ENST00000489212 DUSP21Q9H596 190 aa17.07■□□□□ 0.32
LIME1-207ENST00000489212 ZNF286AQ9HBT8 521 aa17.07■□□□□ 0.32
LIME1-207ENST00000489212 OR6C3Q9NZP0 311 aa17.07■□□□□ 0.32
LIME1-207ENST00000489212 MRPS28Q9Y2Q9 187 aaKnown RBP17.07■□□□□ 0.32
LIME1-207ENST00000489212 SIGLEC9Q9Y336 463 aa17.07■□□□□ 0.32
LIME1-207ENST00000489212 KBTBD11-OT1A0A1B0GTJ5 212 aa17.06■□□□□ 0.32
LIME1-207ENST00000489212 ZNF729A6NN14 1252 aaPredicted RBP17.06■□□□□ 0.32
LIME1-207ENST00000489212 H0YHG0 523 aa17.06■□□□□ 0.32
LIME1-207ENST00000489212 OR7C1O76099 320 aaPredicted RBP17.06■□□□□ 0.32
LIME1-207ENST00000489212 GLP1RP43220 463 aa17.06■□□□□ 0.32
LIME1-207ENST00000489212 PAX5Q02548 391 aa17.06■□□□□ 0.32
LIME1-207ENST00000489212 SPHARQ15513 63 aa17.06■□□□□ 0.32
LIME1-207ENST00000489212 FAM27D1Q5T7N8 215 aa17.06■□□□□ 0.32
LIME1-207ENST00000489212 OR52W1Q6IF63 320 aa17.06■□□□□ 0.32
LIME1-207ENST00000489212 BRICD5Q6PL45 260 aa17.06■□□□□ 0.32
LIME1-207ENST00000489212 GLIPR1L1Q6UWM5 242 aa17.06■□□□□ 0.32
LIME1-207ENST00000489212 UNQ9370/PRO34162Q6UXP9 181 aa17.06■□□□□ 0.32
LIME1-207ENST00000489212 IZUMO2Q6UXV1 221 aa17.06■□□□□ 0.32
LIME1-207ENST00000489212 OR4D6Q8NGJ1 314 aa17.06■□□□□ 0.32
LIME1-207ENST00000489212 NDNFQ8TB73 568 aa17.06■□□□□ 0.32
LIME1-207ENST00000489212 BARHL1Q9BZE3 327 aa17.06■□□□□ 0.32
LIME1-207ENST00000489212 NCOR1P1Q9H4R4 102 aa17.06■□□□□ 0.32
LIME1-207ENST00000489212 TCF19Q9Y242 345 aa17.06■□□□□ 0.32
LIME1-207ENST00000489212 TRAV39A0A0B4J263 110 aa17.05■□□□□ 0.32
LIME1-207ENST00000489212 A6NDX4 124 aa17.05■□□□□ 0.32
LIME1-207ENST00000489212 ZNF780AO75290 641 aaPredicted RBP17.05■□□□□ 0.32
LIME1-207ENST00000489212 IGLV1-47P01700 117 aa17.05■□□□□ 0.32
LIME1-207ENST00000489212 CD34P28906 385 aa17.05■□□□□ 0.32
LIME1-207ENST00000489212 KCNJ3P48549 501 aa17.05■□□□□ 0.32
LIME1-207ENST00000489212 ACSM3Q53FZ2 586 aa17.05■□□□□ 0.32
LIME1-207ENST00000489212 RTN4RL2Q86UN3 420 aa17.05■□□□□ 0.32
LIME1-207ENST00000489212 KIRREL1Q96J84 757 aa17.05■□□□□ 0.32
LIME1-207ENST00000489212 TMED9Q9BVK6 235 aa17.05■□□□□ 0.32
LIME1-207ENST00000489212 VCX3BQ9H321 246 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms