RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 CXorf66Q5JRM2 361 aaPredicted RBP15.4■□□□□ 0.06
VIM-206ENST00000487938 SELENOHQ8IZQ5 122 aaKnown RBP15.4■□□□□ 0.06
VIM-206ENST00000487938 OR2C3Q8N628 320 aa15.4■□□□□ 0.06
VIM-206ENST00000487938 FAM86C1Q9NVL1 165 aa15.4■□□□□ 0.06
VIM-206ENST00000487938 PLA2G3Q9NZ20 509 aa15.4■□□□□ 0.06
VIM-206ENST00000487938 IGSF23A1L1A6 192 aa15.39■□□□□ 0.05
VIM-206ENST00000487938 PMELP40967 661 aa15.39■□□□□ 0.05
VIM-206ENST00000487938 MAGEA5P43359 124 aa15.39■□□□□ 0.05
VIM-206ENST00000487938 NKX2-1P43699 371 aaPredicted RBP15.39■□□□□ 0.05
VIM-206ENST00000487938 ZDHHC23Q8IYP9 409 aa15.39■□□□□ 0.05
VIM-206ENST00000487938 Q8NFD4 153 aa15.39■□□□□ 0.05
VIM-206ENST00000487938 FAM213BQ8TBF2 198 aa15.39■□□□□ 0.05
VIM-206ENST00000487938 ZNF488Q96MN9 340 aa15.39■□□□□ 0.05
VIM-206ENST00000487938 IP6K3Q96PC2 410 aa15.39■□□□□ 0.05
VIM-206ENST00000487938 CCL28Q9NRJ3 127 aa15.39■□□□□ 0.05
VIM-206ENST00000487938 FBXO7Q9Y3I1 522 aa15.39■□□□□ 0.05
VIM-206ENST00000487938 IGKV3D-15A0A087WSY6 115 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 SLC22A20A6NK97 555 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 M0R036 132 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 ADAM20O43506 726 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 TNFSF12O43508 249 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 SYNGR1O43759 233 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 SSSCA1O60232 199 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 CLDN18P56856 261 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 FGF12P61328 243 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 CEACAM21Q3KPI0 293 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 AWAT1Q58HT5 328 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 FAM173AQ9BQD7 235 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 ABHD14AQ9BUJ0 271 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 OR51B6Q9H340 312 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 ZNF552Q9H707 407 aaPredicted RBP15.38■□□□□ 0.05
VIM-206ENST00000487938 NAPSAO96009 420 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 ACP1P24666 158 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 PPP1CCP36873 323 aaKnown RBP15.38■□□□□ 0.05
VIM-206ENST00000487938 UCP2P55851 309 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 RAB1AP62820 205 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 TGIF1Q15583 401 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 C11orf1Q9H5F2 150 aa15.38■□□□□ 0.05
VIM-206ENST00000487938 ZNF703Q9H7S9 590 aaPredicted RBP15.38■□□□□ 0.05
VIM-206ENST00000487938 ZNF98A6NK75 572 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 TRAPPC2LH3BP13 241 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 HS3ST1O14792 307 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 IGFBP7Q16270 282 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 C3AR1Q16581 482 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 NRN1LQ496H8 165 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 FAM185AQ8N0U4 392 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 ISOC2Q96AB3 205 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 TMEM56Q96MV1 263 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 LINC00470Q9BZP3 86 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 TMEM56-RWDD3S4R434 201 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 FRYQ5TBA9 3013 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 IGKV1-6A0A0C4DH72 117 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 C7orf77A4D0Y5 90 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 LILRA1O75019 489 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 SYNGR4O95473 234 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 CDS2O95674 445 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 JMJD7P0C870 316 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 OR13C7P0DN81 318 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 ZNF44P15621 663 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 SHEQ5VZ18 495 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 C20orf204Q6ZNR8 217 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 LINC00696Q6ZRV3 163 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 MKXQ8IYA7 352 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 COMMD1Q8N668 190 aa15.37■□□□□ 0.05
VIM-206ENST00000487938 LILRB1Q8NHL6 650 aaPredicted RBP15.37■□□□□ 0.05
VIM-206ENST00000487938 FAM90A10PA6NDY2 464 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 FAM90A18PA6NE21 464 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 FAM90A16PA6NEW6 464 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 FAM90A20PA6NIJ5 464 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 FAM90A8PA6NJQ4 464 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 FAM90A7PA6NKC0 464 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 ZNF724A8MTY0 619 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 FAM90A22PA8MWA6 464 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 FAM90A12PA8MX19 464 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 FAM90A5PA8MXJ8 464 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 FAM90A23PA8MXZ1 464 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 GPR37O15354 613 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 FAM90A15PP0C7V4 464 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 FAM90A13PP0C7W8 464 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 FAM90A14PP0C7W9 464 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 FAM90A24PP0C7X0 464 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 SRPXP78539 464 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 HMGN3Q15651 99 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 ABHD17BQ5VST6 288 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 OR2G3Q8NGZ4 309 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 APOBEC3DQ96AK3 386 aaPredicted RBP15.36■□□□□ 0.05
VIM-206ENST00000487938 RARRES2Q99969 163 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 STRAPQ9Y3F4 350 aaKnown RBP15.36■□□□□ 0.05
VIM-206ENST00000487938 ZNF407Q9C0G0 2248 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 C9orf172C9J069 976 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 PROB1E7EW31 1015 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 CST7O76096 145 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 ATP6V0CP27449 155 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 RAB5CP51148 216 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 HABP2Q14520 560 aaPredicted RBP15.36■□□□□ 0.05
VIM-206ENST00000487938 C15orf54Q8N8G6 183 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 ZFP62Q8NB50 900 aaPredicted RBP15.36■□□□□ 0.05
VIM-206ENST00000487938 CD300LFQ8TDQ1 290 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 TMEM171Q8WVE6 324 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 HIST1H2AAQ96QV6 131 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms