RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 ABCG5Q9H222 651 aa13.42□□□□□ -0.26
VIM-204ENST00000478746 OR6C3Q9NZP0 311 aa13.42□□□□□ -0.26
VIM-204ENST00000478746 NKX1-2Q9UD57 310 aaPredicted RBP13.42□□□□□ -0.26
VIM-204ENST00000478746 CSMD3Q7Z407 3707 aa13.41□□□□□ -0.26
VIM-204ENST00000478746 CSN2P05814 226 aa13.41□□□□□ -0.26
VIM-204ENST00000478746 ANXA8P13928 327 aa13.41□□□□□ -0.26
VIM-204ENST00000478746 ZNF44P15621 663 aa13.41□□□□□ -0.26
VIM-204ENST00000478746 PRKACGP22612 351 aa13.41□□□□□ -0.26
VIM-204ENST00000478746 FHL3Q13643 280 aa13.41□□□□□ -0.26
VIM-204ENST00000478746 TGIF2LXQ8IUE1 241 aa13.41□□□□□ -0.26
VIM-204ENST00000478746 HS3ST5Q8IZT8 346 aa13.41□□□□□ -0.26
VIM-204ENST00000478746 YIPF7Q8N8F6 280 aa13.41□□□□□ -0.26
VIM-204ENST00000478746 ZNF565Q8N9K5 539 aa13.41□□□□□ -0.26
VIM-204ENST00000478746 CCDC54Q8NEL0 328 aa13.41□□□□□ -0.26
VIM-204ENST00000478746 RNFT2Q96EX2 444 aa13.41□□□□□ -0.26
VIM-204ENST00000478746 COQ2Q96H96 371 aa13.41□□□□□ -0.26
VIM-204ENST00000478746 PSG11Q9UQ72 335 aa13.41□□□□□ -0.26
VIM-204ENST00000478746 CGB3P0DN86 165 aa13.4□□□□□ -0.26
VIM-204ENST00000478746 CGB7P0DN87 165 aa13.4□□□□□ -0.26
VIM-204ENST00000478746 PDZK1IP1Q13113 114 aa13.4□□□□□ -0.26
VIM-204ENST00000478746 EBI3Q14213 229 aa13.4□□□□□ -0.26
VIM-204ENST00000478746 ZNF429Q86V71 674 aa13.4□□□□□ -0.26
VIM-204ENST00000478746 CATSPERDQ86XM0 798 aa13.4□□□□□ -0.26
VIM-204ENST00000478746 ADGRG5Q8IZF4 528 aa13.4□□□□□ -0.26
VIM-204ENST00000478746 PP6455Q8WZ26 134 aa13.4□□□□□ -0.26
VIM-204ENST00000478746 C10orf35Q96D05 121 aa13.4□□□□□ -0.26
VIM-204ENST00000478746 ASB9Q96DX5 294 aa13.4□□□□□ -0.26
VIM-204ENST00000478746 EAF1Q96JC9 268 aaPredicted RBP13.4□□□□□ -0.26
VIM-204ENST00000478746 COMMD4Q9H0A8 199 aa13.4□□□□□ -0.26
VIM-204ENST00000478746 KRT84Q9NSB2 600 aa13.4□□□□□ -0.26
VIM-204ENST00000478746 LIN7CQ9NUP9 197 aaKnown RBP13.4□□□□□ -0.26
VIM-204ENST00000478746 H2AFY2Q9P0M6 372 aaPredicted RBP13.4□□□□□ -0.26
VIM-204ENST00000478746 HYDINQ4G0P3 5121 aa13.4□□□□□ -0.26
VIM-204ENST00000478746 RRP9O43818 475 aaKnown RBP13.39□□□□□ -0.27
VIM-204ENST00000478746 MPZL2O60487 215 aa13.39□□□□□ -0.27
VIM-204ENST00000478746 IGHG4P01861 327 aa13.39□□□□□ -0.27
VIM-204ENST00000478746 KRT8P05787 483 aa13.39□□□□□ -0.27
VIM-204ENST00000478746 HCKP08631 526 aa13.39□□□□□ -0.27
VIM-204ENST00000478746 OR8U8P0C7N1 319 aa13.39□□□□□ -0.27
VIM-204ENST00000478746 PRKACBP22694 351 aa13.39□□□□□ -0.27
VIM-204ENST00000478746 ATXN7L3Q14CW9 347 aaPredicted RBP13.39□□□□□ -0.27
VIM-204ENST00000478746 MOB3BQ86TA1 216 aa13.39□□□□□ -0.27
VIM-204ENST00000478746 CHST4Q8NCG5 386 aa13.39□□□□□ -0.27
VIM-204ENST00000478746 OR1N2Q8NGR9 330 aa13.39□□□□□ -0.27
VIM-204ENST00000478746 ISOC1Q96CN7 298 aa13.39□□□□□ -0.27
VIM-204ENST00000478746 PPIL3Q9H2H8 161 aaKnown RBP13.39□□□□□ -0.27
VIM-204ENST00000478746 CLN6Q9NWW5 311 aa13.39□□□□□ -0.27
VIM-204ENST00000478746 IDI2-AS1Q9NZ38 188 aa13.39□□□□□ -0.27
VIM-204ENST00000478746 STARD9Q9P2P6 4700 aa13.39□□□□□ -0.27
VIM-204ENST00000478746 IGKV1-9A0A0C4DH69 117 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 IGKV1-12A0A0C4DH73 117 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 ERICH4A6NGS2 130 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 SLC33A1O00400 549 aaPredicted RBP13.38□□□□□ -0.27
VIM-204ENST00000478746 DEGS1O15121 323 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 CIB2O75838 187 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 IGKV1D-12P01611 117 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 ATF1P18846 271 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 VDAC1P21796 283 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 C21orf33P30042 268 aaPredicted RBP13.38□□□□□ -0.27
VIM-204ENST00000478746 GLP1RP43220 463 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 GNG10P50151 68 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 CRISP1P54107 249 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 LTC4SQ16873 150 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 Q6P435 159 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 LHFPL2Q6ZUX7 228 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 BCDIN3DQ7Z5W3 292 aaKnown RBP13.38□□□□□ -0.27
VIM-204ENST00000478746 Q8N9W7 124 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 OR10X1Q8NGY0 326 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 CANT1Q8WVQ1 401 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 RFT1Q96AA3 541 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 ADGRL4Q9HBW9 690 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 CALYQ9NYX4 217 aa13.38□□□□□ -0.27
VIM-204ENST00000478746 IGHV3-72A0A0B4J1Y9 119 aa13.37□□□□□ -0.27
VIM-204ENST00000478746 PRKYO43930 277 aa13.37□□□□□ -0.27
VIM-204ENST00000478746 KDM4BO94953 1096 aa13.37□□□□□ -0.27
VIM-204ENST00000478746 GAPDHP04406 335 aaKnown RBP13.37□□□□□ -0.27
VIM-204ENST00000478746 CFHR3Q02985 330 aa13.37□□□□□ -0.27
VIM-204ENST00000478746 FLOT2Q14254 428 aa13.37□□□□□ -0.27
VIM-204ENST00000478746 SSX6Q7RTT6 188 aa13.37□□□□□ -0.27
VIM-204ENST00000478746 OR2T10Q8NGZ9 312 aa13.37□□□□□ -0.27
VIM-204ENST00000478746 RASL11BQ9BPW5 248 aa13.37□□□□□ -0.27
VIM-204ENST00000478746 OSBPL10Q9BXB5 764 aa13.37□□□□□ -0.27
VIM-204ENST00000478746 POMPQ9Y244 141 aa13.37□□□□□ -0.27
VIM-204ENST00000478746 MEIKINA0A087WXM9 373 aa13.36□□□□□ -0.27
VIM-204ENST00000478746 IGHV1-3A0A0C4DH29 117 aa13.36□□□□□ -0.27
VIM-204ENST00000478746 AQP12BA6NM10 295 aa13.36□□□□□ -0.27
VIM-204ENST00000478746 HSD17B6O14756 317 aa13.36□□□□□ -0.27
VIM-204ENST00000478746 GP9P14770 177 aa13.36□□□□□ -0.27
VIM-204ENST00000478746 SPNP16150 400 aa13.36□□□□□ -0.27
VIM-204ENST00000478746 HOXB6P17509 224 aaKnown RBP13.36□□□□□ -0.27
VIM-204ENST00000478746 PSMB8P28062 276 aa13.36□□□□□ -0.27
VIM-204ENST00000478746 ZNF616Q08AN1 781 aa13.36□□□□□ -0.27
VIM-204ENST00000478746 ZNF816Q0VGE8 651 aaPredicted RBP13.36□□□□□ -0.27
VIM-204ENST00000478746 SLC16A12Q6ZSM3 486 aa13.36□□□□□ -0.27
VIM-204ENST00000478746 AQP12AQ8IXF9 295 aa13.36□□□□□ -0.27
VIM-204ENST00000478746 RDH10Q8IZV5 341 aa13.36□□□□□ -0.27
VIM-204ENST00000478746 Q8N6K4 173 aa13.36□□□□□ -0.27
VIM-204ENST00000478746 OR13A1Q8NGR1 328 aa13.36□□□□□ -0.27
VIM-204ENST00000478746 RFESDQ8TAC1 157 aa13.36□□□□□ -0.27
VIM-204ENST00000478746 DNAJC9Q8WXX5 260 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms