RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 TMEM56-RWDD3S4R434 201 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 BOD1L1Q8NFC6 3051 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 DOCK7Q96N67 2140 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 SLC22A20A6NK97 555 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 ZNF727A8MUV8 499 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 UMAD1C9J7I0 102 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 PRH1P02810 166 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 CELA3AP09093 270 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 HOXB1P14653 301 aaPredicted RBP8.45□□□□□ -1.06
SS18-203ENST00000415083 PMELP40967 661 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 RUNX1Q01196 453 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 CLINT1Q14677 625 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 EIF5AL1Q6IS14 154 aaKnown RBP8.45□□□□□ -1.06
SS18-203ENST00000415083 PCSK4Q6UW60 755 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 OR2Y1Q8NGV0 311 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 MAFAQ8NHW3 353 aaPredicted RBP8.45□□□□□ -1.06
SS18-203ENST00000415083 HSD17B6O14756 317 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 SS18L1O75177 396 aaPredicted RBP8.45□□□□□ -1.06
SS18-203ENST00000415083 CLN5O75503 358 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 TDGF1P13385 188 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 TCN2P20062 427 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 RAB5AP20339 215 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 CARD18P57730 90 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 ARL6IP1Q15041 203 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 CNN3Q15417 329 aaKnown RBP8.45□□□□□ -1.06
SS18-203ENST00000415083 IZUMO4Q1ZYL8 232 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 PLCXD3Q63HM9 321 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 TMEM211Q6ICI0 200 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 PSMF1Q92530 271 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 SLAMF9Q96A28 289 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 DUSP23Q9BVJ7 150 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 Q9N2K0 584 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 PLSCR2Q9NRY7 297 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 A0A1B0GW64 132 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 ST8SIA3O43173 380 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 TUSC2O75896 110 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 GUCA1AP43080 201 aaPredicted RBP8.44□□□□□ -1.06
SS18-203ENST00000415083 CAMLGP49069 296 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 FUT6P51993 359 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 EIF5AP63241 154 aaKnown RBP8.44□□□□□ -1.06
SS18-203ENST00000415083 IL11RAQ14626 422 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 ABCA11PQ4W5N1 156 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 SSX7Q7RTT5 188 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 GAPTQ8N292 157 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 CCDC54Q8NEL0 328 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 ZNF251Q9BRH9 671 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 PUS1Q9Y606 427 aaKnown RBP eCLIP8.44□□□□□ -1.06
SS18-203ENST00000415083 CCDC163A0A0D9SF12 145 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 ARGFXA6NJG6 315 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 RPL36A-HNRNPH2H7BZ11 118 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 YIF1AO95070 293 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 MT-ND4LP03901 98 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 CYC1P08574 325 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 OMGP23515 440 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 SRD5A2P31213 254 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 C9orf152Q5JTZ5 239 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 LYSMD4Q5XG99 296 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 PMS2CLQ68D20 193 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 ZNF343Q6P1L6 599 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 Q6ZRM9 215 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 AAED1Q7RTV5 226 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 LGI3Q8N145 548 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 OR2C3Q8N628 320 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 KDF1Q8NAX2 398 aaPredicted RBP8.44□□□□□ -1.06
SS18-203ENST00000415083 ZFP62Q8NB50 900 aaPredicted RBP8.44□□□□□ -1.06
SS18-203ENST00000415083 FAM213BQ8TBF2 198 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 ZNF488Q96MN9 340 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 CALHM2Q9HA72 323 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 KCNIP3Q9Y2W7 256 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 CLEC18AA5D8T8 446 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 ADAM20O43506 726 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 CDS2O95674 445 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 PDGFBP01127 241 aaPredicted RBP8.44□□□□□ -1.06
SS18-203ENST00000415083 CXCL1P09341 107 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 FUT3P21217 361 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 ICAM4Q14773 271 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 Q6ZS49 121 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 TIPARPQ7Z3E1 657 aaKnown RBP8.44□□□□□ -1.06
SS18-203ENST00000415083 TMEM252Q8N6L7 170 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 TMEM105Q8N8V8 129 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 CLEC18CQ8NCF0 446 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 MUCL1Q96DR8 90 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 MALSU1Q96EH3 234 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 SYT3Q9BQG1 590 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 SLC35B3Q9H1N7 401 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 ZNF286AQ9HBT8 521 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 CCL28Q9NRJ3 127 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 MMP24Q9Y5R2 645 aa8.44□□□□□ -1.06
SS18-203ENST00000415083 HSPB6O14558 160 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 SYNGR1O43759 233 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 SSSCA1O60232 199 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 OR7C1O76099 320 aaPredicted RBP8.43□□□□□ -1.06
SS18-203ENST00000415083 SLC34A2O95436 690 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 NGFP01138 241 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 IGKV1-39P01597 117 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 IGKV1D-39P04432 117 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 DYNLT3P51808 116 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 RND3P61587 244 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 ID3Q02535 119 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 C9orf135Q5VTT2 229 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms