RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 OR51S1Q8NGJ8 323 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 OR9G1Q8NH87 305 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 GRPEL2Q8TAA5 225 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 EEF1AKMT1Q8WVE0 214 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 ASB17Q8WXJ9 295 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 TMEM203Q969S6 136 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 ZNF524Q96C55 264 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 RDH12Q96NR8 316 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 DUX3Q96PT4 197 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 SIGMAR1Q99720 223 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 FAIMQ9NVQ4 179 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 DNAJC27Q9NZQ0 273 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 MTFP1Q9UDX5 166 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 ANGPT4Q9Y264 503 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 SLC35A3Q9Y2D2 325 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 LAMC1P11047 1609 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 UNC13BO14795 1591 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 TRPM2O94759 1503 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 RALGAPBQ86X10 1494 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 J3QT63 122 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 UPK1BO75841 260 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 SERPINA7P05543 415 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 OR8U8P0C7N1 319 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 MYL9P24844 172 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 PAX6P26367 422 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 CHRNB4P30926 498 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 CD300CQ08708 224 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 HIST3H3Q16695 136 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 MRGPRG-AS1Q2M3A8 158 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 PYCR3Q53H96 274 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 C9orf64Q5T6V5 341 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 TMEM205Q6UW68 189 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 SLC22A18ASQ8N1D0 253 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 OR2Z1Q8NG97 314 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 OR10J6PQ8NGY7 276 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 ZFP90Q8TF47 636 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 ASB13Q8WXK3 278 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 DCPSQ96C86 337 aaKnown RBP3.16□□□□□ -1.9
HMGB1-204ENST00000399489 BIRC8Q96P09 236 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 TAPBPLQ9BX59 468 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 OR11A1Q9GZK7 315 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 DEFB127Q9H1M4 99 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 NMNAT1Q9HAN9 279 aaPredicted RBP3.16□□□□□ -1.9
HMGB1-204ENST00000399489 UGT2A1Q9Y4X1 527 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 DISP2A7MBM2 1401 aa3.15□□□□□ -1.9
HMGB1-204ENST00000399489 RIMS2Q9UQ26 1411 aa3.15□□□□□ -1.9
HMGB1-204ENST00000399489 GLI3P10071 1580 aa3.15□□□□□ -1.9
HMGB1-204ENST00000399489 SLIT2O94813 1529 aa3.15□□□□□ -1.9
HMGB1-204ENST00000399489 EHBP1L1Q8N3D4 1523 aa3.15□□□□□ -1.9
HMGB1-204ENST00000399489 DUOX2Q9NRD8 1548 aa3.15□□□□□ -1.9
HMGB1-204ENST00000399489 IGHV3-16A0A0C4DH30 117 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 PRORSD1PA6NEY8 169 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 C15orf65H3BRN8 121 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 TMX2-CTNND1H3BSU7 103 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 BMPR1BO00238 502 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 FOXH1O75593 365 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 PDYNP01213 254 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 PTHP01270 115 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 IFNA4P05014 189 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 GKN3PP0CG01 181 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 IFI30P13284 250 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 LMO2P25791 158 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 GGT2P36268 569 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 CACNG7P62955 275 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 DYNLL1P63167 89 aaKnown RBP3.15□□□□□ -1.91
HMGB1-204ENST00000399489 RELAQ04206 551 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 BAMBIQ13145 260 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 QPRTQ15274 297 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 FAM78BQ5VT40 261 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 STEAP4Q687X5 459 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 COMMD7Q86VX2 200 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 C11orf72Q8NBR9 251 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 OR1P1Q8NH06 330 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 OR4K15Q8NH41 348 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 RNF185Q96GF1 192 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 CMSS1Q9BQ75 279 aaKnown RBP3.15□□□□□ -1.91
HMGB1-204ENST00000399489 EBF4Q9BQW3 602 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 SULT4A1Q9BR01 284 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 FAAP24Q9BTP7 215 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 MED18Q9BUE0 208 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 SLIRPQ9GZT3 109 aaKnown RBP3.15□□□□□ -1.91
HMGB1-204ENST00000399489 OR51I1Q9H343 314 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 HMG20AQ9NP66 347 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 TMEM100Q9NV29 134 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 CLCF1Q9UBD9 225 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 ZNF223Q9UK11 482 aaPredicted RBP3.15□□□□□ -1.91
HMGB1-204ENST00000399489 TRAPPC4Q9Y296 219 aa3.15□□□□□ -1.91
HMGB1-204ENST00000399489 C1orf167Q5SNV9 1468 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 IGHV3OR16-9A0A0B4J2B5 98 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 FAM92AA1XBS5 289 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 CCDC144AA2RUR9 1427 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 RPL37AP8A6NKH3 93 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 EVPLLA8MZ36 301 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 SLC17A3O00476 420 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 XKRYO14609 159 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 NPIPB7O75200 414 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 RDH16O75452 317 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 IGKV5-2P06315 115 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 MRPL3P09001 348 aaKnown RBP3.14□□□□□ -1.91
HMGB1-204ENST00000399489 ERGP11308 486 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms