RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 GMFBP60983 142 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 PDZK1IP1Q13113 114 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 OPCMLQ14982 345 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 TAF9Q16594 264 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 CHRFAM7AQ494W8 412 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 SIGIRRQ6IA17 410 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 MRPL21Q7Z2W9 205 aaKnown RBP8.63□□□□□ -1.03
VPS53-202ENST00000389040 TMEM17Q86X19 198 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 OR13G1Q8NGZ3 307 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 MAFIPQ8WZ33 124 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 EMG1Q92979 244 aaKnown RBP8.63□□□□□ -1.03
VPS53-202ENST00000389040 MRPS24Q96EL2 167 aaKnown RBP8.63□□□□□ -1.03
VPS53-202ENST00000389040 SCGB3A2Q96PL1 93 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 CXXC4Q9H2H0 198 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 LIME1Q9H400 295 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 TAAR3PQ9P1P4 343 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 PURGQ9UJV8 347 aaKnown RBP8.63□□□□□ -1.03
VPS53-202ENST00000389040 HSF4Q9ULV5 492 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 FXYD6-FXYD2A0A087WZ82 144 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 ANKRD34BA5PLL1 514 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 ZNF850A8MQ14 1090 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 TIMM8AO60220 97 aaPredicted RBP8.62□□□□□ -1.03
VPS53-202ENST00000389040 F12P00748 615 aaPredicted RBP8.62□□□□□ -1.03
VPS53-202ENST00000389040 VAMP1P23763 118 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 FPR2P25090 351 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 EFNA4P52798 201 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 DSCR9P59020 149 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 ERVS71-1P61550 626 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 SRSF4Q08170 494 aaKnown RBP8.62□□□□□ -1.03
VPS53-202ENST00000389040 MZT1Q08AG7 82 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 SHEQ5VZ18 495 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 LHFPL1Q86WI0 220 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 OSR2Q8N2R0 312 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 SPERTQ8NA61 448 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 OR8G5Q8NG78 346 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 OR5AP2Q8NGF4 316 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 OR56B2PQ8NGI1 322 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 SYT3Q9BQG1 590 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 PAPOLGQ9BWT3 736 aaKnown RBP8.62□□□□□ -1.03
VPS53-202ENST00000389040 FXYD6Q9H0Q3 95 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 OR51B6Q9H340 312 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 C5orf66Q9H5L9 145 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 DYNLRB1Q9NP97 96 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 PCDHB16Q9NRJ7 776 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 EHFQ9NZC4 300 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 TACC2O95359 2948 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 CADP27708 2225 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 RFPL4AA6NLU0 287 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 C17orf100A8MU93 164 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 RFPL4AL1F8VTS6 287 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 SDCBPO00560 298 aaPredicted RBP8.62□□□□□ -1.03
VPS53-202ENST00000389040 GEMIN2O14893 280 aaKnown RBP8.62□□□□□ -1.03
VPS53-202ENST00000389040 DUS4LO95620 317 aaKnown RBP8.62□□□□□ -1.03
VPS53-202ENST00000389040 CD55P08174 381 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 HLA-GP17693 338 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 TNFSF4P23510 183 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 IKZF1Q13422 519 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 EXOSC2Q13868 293 aaKnown RBP8.62□□□□□ -1.03
VPS53-202ENST00000389040 HLXQ14774 488 aaPredicted RBP8.62□□□□□ -1.03
VPS53-202ENST00000389040 MSMPQ1L6U9 139 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 SPATA46Q5T0L3 261 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 AADACL3Q5VUY0 350 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 OVCH2Q7RTZ1 564 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 PEG10Q86TG7 708 aaKnown RBP8.62□□□□□ -1.03
VPS53-202ENST00000389040 LRP11Q86VZ4 500 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 OR8H3Q8N146 312 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 TMEM185AQ8NFB2 350 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 OR51F2Q8NH61 342 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 CASTOR1Q8WTX7 329 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 PPA2Q9H2U2 334 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 UBQLN2Q9UHD9 624 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 AK3Q9UIJ7 227 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 GPR132Q9UNW8 380 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 PRR14LQ5THK1 2151 aa8.62□□□□□ -1.03
VPS53-202ENST00000389040 IGKV1D-8A0A087WSZ0 117 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 TRAV14DV4A0A0A6YYC5 116 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 CD300LBA8K4G0 201 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 NOS1APO75052 506 aaPredicted RBP8.61□□□□□ -1.03
VPS53-202ENST00000389040 CST4P01036 141 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 SFTPBP07988 381 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 CHATP28329 748 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 S100A11P31949 105 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 MPV17P39210 176 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 FGL1Q08830 312 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 PRDX4Q13162 271 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 PIGYQ3MUY2 71 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 TMEM128Q5BJH2 165 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 TMUB2Q71RG4 321 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 CALHM1Q8IU99 346 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 ZSCAN4Q8NAM6 433 aaPredicted RBP8.61□□□□□ -1.03
VPS53-202ENST00000389040 OR10AD1Q8NGE0 317 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 HDHD3Q9BSH5 251 aaPredicted RBP8.61□□□□□ -1.03
VPS53-202ENST00000389040 FAAP24Q9BTP7 215 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 PDCD10Q9BUL8 212 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 EGLN1Q9GZT9 426 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 TMEM100Q9NV29 134 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 ZNF581Q9P0T4 197 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 ST3GAL6Q9Y274 331 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 MAB21L2Q9Y586 359 aa8.61□□□□□ -1.03
VPS53-202ENST00000389040 PQLC2LA1A4F0 135 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms