RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 DDX60Q8IY21 1712 aaKnown RBP11.14□□□□□ -0.63
SDC3-201ENST00000336798 CXorf65A6NEN9 183 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 SLC6A1P30531 599 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 C17orf47Q8NEP4 570 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 OR4S2Q8NH73 311 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 APOBEC4Q8WW27 367 aaKnown RBP11.13□□□□□ -0.63
SDC3-201ENST00000336798 OR10C1Q96KK4 312 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 PRDM14Q9GZV8 571 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 ZNF275Q9NSD4 429 aaPredicted RBP11.13□□□□□ -0.63
SDC3-201ENST00000336798 MFNGO00587 321 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 PMELP40967 661 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 OR8I2Q8N0Y5 310 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 OR2C3Q8N628 320 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 OR1L6Q8NGR2 347 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 TMEFF2Q9UIK5 374 aaPredicted RBP11.13□□□□□ -0.63
SDC3-201ENST00000336798 TIAM2Q8IVF5 1701 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 SRD5A2P31213 254 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 MVDP53602 400 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 GGTLC2Q14390 218 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 SLC23A3Q6PIS1 610 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 ASB10Q8WXI3 467 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 FBXL17Q9UF56 701 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 TCFL5Q9UL49 500 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 CDRT15L2A8MXV6 281 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 H7C2G1 150 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 NDUFB6O95139 128 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 SLC25A1P53007 311 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 EIF4E3Q8N5X7 224 aaKnown RBP11.13□□□□□ -0.63
SDC3-201ENST00000336798 OR4X1Q8NH49 305 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 RTN4RQ9BZR6 473 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 HILPDAQ9Y5L2 63 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 C4AP0C0L4 1744 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 ASPDHA6ND91 283 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 SRSF9Q13242 221 aaKnown RBP eCLIP11.13□□□□□ -0.63
SDC3-201ENST00000336798 DOLPP1Q86YN1 238 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 ZDHHC22Q8N966 263 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 ATP5SQ99766 215 aa11.13□□□□□ -0.63
SDC3-201ENST00000336798 RPS4Y1P22090 263 aaKnown RBP11.12□□□□□ -0.63
SDC3-201ENST00000336798 SSBP1Q04837 148 aaKnown RBP11.12□□□□□ -0.63
SDC3-201ENST00000336798 D2HGDHQ8N465 521 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 P01737 135 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 PARD6GQ9BYG4 376 aaPredicted RBP11.12□□□□□ -0.63
SDC3-201ENST00000336798 AMDHD2Q9Y303 409 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 ASCC3Q8N3C0 2202 aaKnown RBP11.12□□□□□ -0.63
SDC3-201ENST00000336798 SOCS1O15524 211 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 NXPH1P58417 271 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 ELOA3CA0A087WX78 387 aaPredicted RBP11.12□□□□□ -0.63
SDC3-201ENST00000336798 HRKO00198 91 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 COL8A1P27658 744 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 LOXL3P58215 753 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 AESQ08117 197 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 MPV17LQ2QL34 196 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 PIGYQ3MUY2 71 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 ZNF880Q6PDB4 577 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 NUFIP2Q7Z417 695 aaKnown RBP11.12□□□□□ -0.63
SDC3-201ENST00000336798 FAM210BQ96KR6 192 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 OOEPA6NGQ2 149 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 B4E171 279 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 LYRM7Q5U5X0 104 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 PRNTQ86SH4 94 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 GAPTQ8N292 157 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 UCN2Q96RP3 112 aa11.12□□□□□ -0.63
SDC3-201ENST00000336798 OR5B21A6NL26 309 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 ZNF426Q9BUY5 554 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 ANKRD36CQ5JPF3 1778 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 AHDC1Q5TGY3 1603 aaPredicted RBP11.11□□□□□ -0.63
SDC3-201ENST00000336798 CHST1O43916 411 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 GABRA1P14867 456 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 DAOP14920 347 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 GPBAR1Q8TDU6 330 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 TECRQ9NZ01 308 aaKnown RBP11.11□□□□□ -0.63
SDC3-201ENST00000336798 ZNF707Q96C28 371 aaPredicted RBP11.11□□□□□ -0.63
SDC3-201ENST00000336798 RGPD1P0DJD0 1748 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 IGHV3-72A0A0B4J1Y9 119 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 TRDCB7Z8K6 153 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 CLDN34H7C241 214 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 FAM157CP0CG43 387 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 CCL3P10147 92 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 PRF1P14222 555 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 GFRA1P56159 465 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 DLX1P56177 255 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 TAS2R60P59551 318 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 MRM1Q6IN84 353 aaKnown RBP11.11□□□□□ -0.63
SDC3-201ENST00000336798 LRRC75AQ8NAA5 344 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 SLC25A40Q8TBP6 338 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 Q8WTZ3 238 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 HARBI1Q96MB7 349 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 RASL10BQ96S79 203 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 CCL28Q9NRJ3 127 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 CYSLTR2Q9NS75 346 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 HIST3H3Q16695 136 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 ZNF362Q5T0B9 420 aaPredicted RBP11.11□□□□□ -0.63
SDC3-201ENST00000336798 C10orf113Q5VZT2 155 aa11.11□□□□□ -0.63
SDC3-201ENST00000336798 C11orf94C9JXX5 98 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 M0R3E3 92 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 CDC42EP2O14613 210 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 MPC2O95563 127 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 MMDQ15546 238 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 OR4A47Q6IF82 309 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 BVESQ8NE79 360 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms