RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 FAM53BQ14153 422 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 TMEM52BQ4KMG9 183 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 ARHGAP5-AS1Q96IT6 56 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 TEPPQ6URK8 271 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 R3HDM4Q96D70 268 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 WFIKKN1Q96NZ8 548 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 CITED2Q99967 270 aaPredicted RBP12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 PRR14Q9BWN1 585 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 ISG20L2Q9H9L3 353 aaKnown RBP12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 PTGESO14684 152 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 KBTBD11O94819 623 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 HTRA3P83110 453 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 NFAM1Q8NET5 270 aaPredicted RBP12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 OR13C6PQ8NH95 151 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 IGHV3-20A0A0C4DH32 117 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 TMPRSS2O15393 492 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 DHHO43323 396 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 CEACAM16Q2WEN9 425 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 OTOSQ8NHW6 89 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 IL19Q9UHD0 177 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 INSIG2Q9Y5U4 225 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 PMELP40967 661 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 C1QTNF9BB2RNN3 333 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 NAT2P11245 290 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 MEGF10Q96KG7 1140 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 C16orf92Q96LL3 132 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 FOXB1Q99853 325 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 B9D1Q9UPM9 204 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 IGKV3-7A0A075B6H7 116 aa12.4□□□□□ -0.43
CCDC88A-201ENST00000263630 ZGLP1P0C6A0 271 aa12.4□□□□□ -0.43
CCDC88A-201ENST00000263630 ZNF750Q32MQ0 723 aa12.4□□□□□ -0.43
CCDC88A-201ENST00000263630 GCSAMLQ5JQS6 135 aa12.4□□□□□ -0.43
CCDC88A-201ENST00000263630 TMEM255AQ5JRV8 349 aa12.4□□□□□ -0.43
CCDC88A-201ENST00000263630 AFMIDQ63HM1 303 aa12.4□□□□□ -0.43
CCDC88A-201ENST00000263630 TP53INP2Q8IXH6 220 aa12.4□□□□□ -0.43
CCDC88A-201ENST00000263630 STPG2Q8N412 459 aa12.4□□□□□ -0.43
CCDC88A-201ENST00000263630 LSM10Q969L4 123 aaKnown RBP12.4□□□□□ -0.43
CCDC88A-201ENST00000263630 RAB33BQ9H082 229 aa12.4□□□□□ -0.43
CCDC88A-201ENST00000263630 HRO43593 1189 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 RPS20P60866 119 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 PHLDA1Q8WV24 401 aaPredicted RBP12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 RECKO95980 971 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 PTCRAQ6ISU1 281 aaPredicted RBP12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 RND1Q92730 232 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 MED29Q9NX70 200 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 MMP17Q9ULZ9 603 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 KIF26BQ2KJY2 2108 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 CICQ96RK0 1608 aaPredicted RBP12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 TMEM189A5PLL7 270 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 SMIM13P0DJ93 91 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 UBE2V2Q15819 145 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 NCMAPQ5T1S8 102 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 BAHD1Q8TBE0 780 aaPredicted RBP12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 DLX6P56179 175 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 PLPPR5Q32ZL2 321 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 SPINK9Q5DT21 86 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 ZNF707Q96C28 371 aaPredicted RBP12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 HIGD1AQ9Y241 93 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 TRAV17A0A0B4J275 112 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 RBMY1BA6NDE4 496 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 RBMY1EA6NEQ0 496 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 FAM157AC9JC47 383 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 RBMY1DP0C7P1 496 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 RBMY1A1P0DJD3 496 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 RBMY1CP0DJD4 496 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 RNF167Q9H6Y7 350 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 RHBDD2Q6NTF9 364 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 FAM222BQ8WU58 562 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 ALKBH3Q96Q83 286 aaPredicted RBP12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 TNFRSF19Q9NS68 423 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 TMEM272A0A1B0GTI8 110 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 ZNF252P-AS1Q0IIN9 211 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 UBE2FQ969M7 185 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 CA6P23280 308 aa12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 ZCCHC14Q8WYQ9 949 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-201ENST00000263630 RGPD8O14715 1765 aaPredicted RBP12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 SNED1Q8TER0 1413 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 C17orf51A8MQB3 221 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 ALG1L2C9J202 215 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 MRPL16Q9NX20 251 aaKnown RBP12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 A0A0U1RQS6 177 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 A0A1W2PQM1 296 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 PDCD6O75340 191 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 WNT5AP41221 380 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 TMEM33P57088 247 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 PPP1R1AQ13522 171 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 CCR5P51681 352 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 LOXL2Q9Y4K0 774 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 LINC00596Q86U02 117 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 A0A087WUJ7 227 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 SLC25A1P53007 311 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 MDP1Q86V88 176 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 RNF133Q8WVZ7 376 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 KIR2DL4Q99706 377 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 OR10AG1Q8NH19 301 aa12.38□□□□□ -0.43
CCDC88A-201ENST00000263630 RNFT1Q5M7Z0 435 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 LAMTOR1Q6IAA8 161 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 C16orf52Q8NHV5 167 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 TRAV8-7A0A075B6U6 113 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 SLC25A17O43808 307 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms