RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 RHEBQ15382 184 aa16.08■□□□□ 0.17
CPSF3-201ENST00000238112 SRSF7Q16629 238 aaKnown RBP eCLIP16.08■□□□□ 0.17
CPSF3-201ENST00000238112 MRPL21Q7Z2W9 205 aaKnown RBP16.08■□□□□ 0.17
CPSF3-201ENST00000238112 SELENOHQ8IZQ5 122 aaKnown RBP16.08■□□□□ 0.17
CPSF3-201ENST00000238112 GAPTQ8N292 157 aa16.08■□□□□ 0.17
CPSF3-201ENST00000238112 ZNF561Q8N587 486 aa16.08■□□□□ 0.17
CPSF3-201ENST00000238112 OR1J1Q8NGS3 322 aa16.08■□□□□ 0.17
CPSF3-201ENST00000238112 REPIN1Q9BWE0 567 aaKnown RBP16.08■□□□□ 0.17
CPSF3-201ENST00000238112 BOKQ9UMX3 212 aaPredicted RBP16.08■□□□□ 0.17
CPSF3-201ENST00000238112 HSPB6O14558 160 aa16.08■□□□□ 0.16
CPSF3-201ENST00000238112 OR13C7P0DN81 318 aa16.08■□□□□ 0.16
CPSF3-201ENST00000238112 DAOP14920 347 aa16.08■□□□□ 0.16
CPSF3-201ENST00000238112 SRYQ05066 204 aa16.08■□□□□ 0.16
CPSF3-201ENST00000238112 ZDHHC23Q8IYP9 409 aa16.08■□□□□ 0.16
CPSF3-201ENST00000238112 SAXO1Q8IYX7 474 aa16.08■□□□□ 0.16
CPSF3-201ENST00000238112 MAGT1Q9H0U3 335 aa16.08■□□□□ 0.16
CPSF3-201ENST00000238112 LYRM2Q9NU23 88 aaPredicted RBP16.08■□□□□ 0.16
CPSF3-201ENST00000238112 TNRC6BQ9UPQ9 1833 aaKnown RBP16.08■□□□□ 0.16
CPSF3-201ENST00000238112 KIR2DS1A0A191URI9 304 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 A0A1W2PPH5 198 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 C5orf49A4QMS7 147 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 A6NLC8 198 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 B4E171 279 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 PRSS44E7EML9 344 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 EIF3GO75821 320 aaKnown RBP eCLIP16.07■□□□□ 0.16
CPSF3-201ENST00000238112 NAPSAO96009 420 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 SERPINA7P05543 415 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 ATP6V0CP27449 155 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 TSPAN7P41732 249 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 KIR2DS4P43632 304 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 FOXO1Q12778 655 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 KIR2DS1Q14954 304 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 ABHD14BQ96IU4 210 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 A0A1B0GW64 132 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 HSPA12AO43301 675 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 CCL2P13500 99 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 SSPNQ14714 243 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 EIF2S3LQ2VIR3 472 aaKnown RBP16.07■□□□□ 0.16
CPSF3-201ENST00000238112 CEACAM21Q3KPI0 293 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 C5orf24Q7Z6I8 188 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 TMEM252Q8N6L7 170 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 TAAR9Q96RI9 348 aa16.07■□□□□ 0.16
CPSF3-201ENST00000238112 DUXBA0A1W2PPF3 345 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 SLC22A20A6NK97 555 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 ZNF724A8MTY0 619 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 TRAPPC2LH3BP13 241 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 HSD17B6O14756 317 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 GPR37O15354 613 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 ZNF14P17017 642 aaPredicted RBP16.06■□□□□ 0.16
CPSF3-201ENST00000238112 SULT1A1P50225 295 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 TGIF1Q15583 401 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 MPV17LQ2QL34 196 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 CXorf66Q5JRM2 361 aaPredicted RBP16.06■□□□□ 0.16
CPSF3-201ENST00000238112 SPINK14Q6IE38 97 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 UBALD2Q8IYN6 164 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 ZFP62Q8NB50 900 aaPredicted RBP16.06■□□□□ 0.16
CPSF3-201ENST00000238112 SUMF2Q8NBJ7 301 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 CT55Q8WUE5 264 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 LINC00470Q9BZP3 86 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 IFT22Q9H7X7 185 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 LRFN1Q9P244 771 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 IGKV3D-15A0A087WSY6 115 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 LINC01387J3KSC0 135 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 ZNHIT1O43257 154 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 HLA-HP01893 362 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 ITGA3P26006 1051 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 SOHLH1Q5JUK2 328 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 C6orf15Q6UXA7 325 aaPredicted RBP16.06■□□□□ 0.16
CPSF3-201ENST00000238112 MKXQ8IYA7 352 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 CMTM1Q8IZ96 169 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 OR5C1Q8NGR4 320 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 HS3ST6Q96QI5 342 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 GPHA2Q96T91 129 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 FGF23Q9GZV9 251 aaPredicted RBP16.06■□□□□ 0.16
CPSF3-201ENST00000238112 SMDT1Q9H4I9 107 aa16.06■□□□□ 0.16
CPSF3-201ENST00000238112 IGKV1D-13A0A0B4J2D9 117 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 C5orf52A6NGY3 159 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 ZNF732B4DXR9 585 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 CTXN2P0C2S0 81 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 IGKV1-13P0DP09 117 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 RAB5AP20339 215 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 AGAP20933 346 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 VDAC1P21796 283 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 HERPUD1Q15011 391 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 TSC22D1Q15714 1073 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 TMEM171Q8WVE6 324 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 APOBEC3DQ96AK3 386 aaPredicted RBP16.05■□□□□ 0.16
CPSF3-201ENST00000238112 HIST1H2AAQ96QV6 131 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 MTCH1Q9NZJ7 389 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 CRIM1Q9NZV1 1036 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 IL36RNQ9UBH0 155 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 WRBO00258 174 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 CTAG1AP78358 180 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 S100A12P80511 92 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 LILRB1Q8NHL6 650 aaPredicted RBP16.05■□□□□ 0.16
CPSF3-201ENST00000238112 RARRES2Q99969 163 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 CALHM2Q9HA72 323 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 RFNGQ9Y644 331 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 ATP23Q9Y6H3 246 aa16.05■□□□□ 0.16
CPSF3-201ENST00000238112 CDRT15L2A8MXV6 281 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms