RNA–Protein interactions for RNA: ENST00000626466.1

TCF4-253, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 1,004 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-253	ENST00000626466	DEFB129	Q9H1M3	183 aa		13.63	□□□□□ -0.23
TCF4-253	ENST00000626466	LEMD3	Q9Y2U8	911 aa		13.63	□□□□□ -0.23
TCF4-253	ENST00000626466		F8W031	263 aa	Predicted RBP	13.62	□□□□□ -0.23
TCF4-253	ENST00000626466	MKRN4P	Q13434	485 aa	Predicted RBP	13.62	□□□□□ -0.23
TCF4-253	ENST00000626466	HELB	Q8NG08	1087 aa	Predicted RBP	13.62	□□□□□ -0.23
TCF4-253	ENST00000626466	CD99L2	Q8TCZ2	262 aa		13.62	□□□□□ -0.23
TCF4-253	ENST00000626466	CD209	Q9NNX6	404 aa		13.62	□□□□□ -0.23
TCF4-253	ENST00000626466	JAG2	Q9Y219	1238 aa		13.62	□□□□□ -0.23
TCF4-253	ENST00000626466	MYH3	P11055	1940 aa		13.62	□□□□□ -0.23
TCF4-253	ENST00000626466	COL1A1	P02452	1464 aa	Predicted RBP	13.61	□□□□□ -0.23
TCF4-253	ENST00000626466	IGHMBP2	P38935	993 aa	Known RBP	13.61	□□□□□ -0.23
TCF4-253	ENST00000626466	CHRND	Q07001	517 aa		13.61	□□□□□ -0.23
TCF4-253	ENST00000626466	MAP3K11	Q16584	847 aa		13.61	□□□□□ -0.23
TCF4-253	ENST00000626466	HABP4	Q5JVS0	413 aa	Known RBP	13.61	□□□□□ -0.23
TCF4-253	ENST00000626466	SLC10A4	Q96EP9	437 aa		13.61	□□□□□ -0.23
TCF4-253	ENST00000626466	MANSC4	A6NHS7	340 aa	Predicted RBP	13.6	□□□□□ -0.23
TCF4-253	ENST00000626466	SPDYE4	A6NLX3	237 aa		13.6	□□□□□ -0.23
TCF4-253	ENST00000626466	TAF5L	O75529	589 aa		13.6	□□□□□ -0.23
TCF4-253	ENST00000626466	CRHR2	Q13324	411 aa		13.6	□□□□□ -0.23
TCF4-253	ENST00000626466	GCKR	Q14397	625 aa		13.6	□□□□□ -0.23
TCF4-253	ENST00000626466	DLGAP5	Q15398	846 aa		13.6	□□□□□ -0.23
TCF4-253	ENST00000626466	NBPF12	Q5TAG4	269 aa	Predicted RBP	13.6	□□□□□ -0.23
TCF4-253	ENST00000626466	CDAN1	Q8IWY9	1227 aa		13.6	□□□□□ -0.23
TCF4-253	ENST00000626466	PTPN18	Q99952	460 aa		13.6	□□□□□ -0.23
TCF4-253	ENST00000626466	PLA2G12B	Q9BX93	195 aa		13.6	□□□□□ -0.23
TCF4-253	ENST00000626466	HTT	P42858	3142 aa		13.59	□□□□□ -0.23
TCF4-253	ENST00000626466	CSF1R	P07333	972 aa		13.59	□□□□□ -0.23
TCF4-253	ENST00000626466	EN2	P19622	333 aa	Predicted RBP	13.59	□□□□□ -0.23
TCF4-253	ENST00000626466	NEXN	Q0ZGT2	675 aa		13.59	□□□□□ -0.23
TCF4-253	ENST00000626466	CFAP100	Q494V2	611 aa		13.59	□□□□□ -0.23
TCF4-253	ENST00000626466	PRMT6	Q96LA8	375 aa	Predicted RBP	13.59	□□□□□ -0.23
TCF4-253	ENST00000626466		A0A1B0GUL6	1792 aa		13.58	□□□□□ -0.23
TCF4-253	ENST00000626466	LAMB1	P07942	1786 aa		13.58	□□□□□ -0.23
TCF4-253	ENST00000626466	SPDYE2B	A6NHP3	402 aa		13.58	□□□□□ -0.24
TCF4-253	ENST00000626466	ABCB7	O75027	752 aa		13.58	□□□□□ -0.24
TCF4-253	ENST00000626466	USP2	O75604	605 aa	Predicted RBP	13.58	□□□□□ -0.24
TCF4-253	ENST00000626466	ALDH1A1	P00352	501 aa		13.58	□□□□□ -0.24
TCF4-253	ENST00000626466	SPDYE6	P0CI01	402 aa		13.58	□□□□□ -0.24
TCF4-253	ENST00000626466	ZBTB48	P10074	688 aa	Predicted RBP	13.58	□□□□□ -0.24
TCF4-253	ENST00000626466	KCNJ4	P48050	445 aa		13.58	□□□□□ -0.24
TCF4-253	ENST00000626466	CALD1	Q05682	793 aa	Known RBP	13.58	□□□□□ -0.24
TCF4-253	ENST00000626466	MTMR14	Q8NCE2	650 aa		13.58	□□□□□ -0.24
TCF4-253	ENST00000626466	ANKRD2	Q9GZV1	360 aa		13.58	□□□□□ -0.24
TCF4-253	ENST00000626466	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.58	□□□□□ -0.24
TCF4-253	ENST00000626466	VEZT	Q9HBM0	779 aa		13.58	□□□□□ -0.24
TCF4-253	ENST00000626466	PTPN22	Q9Y2R2	807 aa		13.58	□□□□□ -0.24
TCF4-253	ENST00000626466	ARMC5	Q96C12	935 aa		13.57	□□□□□ -0.24
TCF4-253	ENST00000626466	MPHOSPH8	Q99549	860 aa		13.57	□□□□□ -0.24
TCF4-253	ENST00000626466	OTOF	Q9HC10	1997 aa		13.57	□□□□□ -0.24
TCF4-253	ENST00000626466	FOXO4	P98177	505 aa		13.56	□□□□□ -0.24
TCF4-253	ENST00000626466	FLII	Q13045	1269 aa		13.56	□□□□□ -0.24
TCF4-253	ENST00000626466	RASA3	Q14644	834 aa		13.56	□□□□□ -0.24
TCF4-253	ENST00000626466	TWISTNB	Q3B726	338 aa	Predicted RBP	13.56	□□□□□ -0.24
TCF4-253	ENST00000626466	CCDC184	Q52MB2	194 aa		13.56	□□□□□ -0.24
TCF4-253	ENST00000626466	EPHA10	Q5JZY3	1008 aa		13.56	□□□□□ -0.24
TCF4-253	ENST00000626466	C15orf52	Q6ZUT6	534 aa	Known RBP	13.56	□□□□□ -0.24
TCF4-253	ENST00000626466	ERO1A	Q96HE7	468 aa		13.56	□□□□□ -0.24
TCF4-253	ENST00000626466	STK31	Q9BXU1	1019 aa		13.56	□□□□□ -0.24
TCF4-253	ENST00000626466	ELP3	Q9H9T3	547 aa		13.56	□□□□□ -0.24
TCF4-253	ENST00000626466	PPP2R3B	Q9Y5P8	575 aa		13.56	□□□□□ -0.24
TCF4-253	ENST00000626466	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.55	□□□□□ -0.24
TCF4-253	ENST00000626466	PPP1R12B	O60237	982 aa	Predicted RBP	13.55	□□□□□ -0.24
TCF4-253	ENST00000626466	IL1R1	P14778	569 aa		13.55	□□□□□ -0.24
TCF4-253	ENST00000626466	MMP14	P50281	582 aa		13.55	□□□□□ -0.24
TCF4-253	ENST00000626466	INHBE	P58166	350 aa		13.55	□□□□□ -0.24
TCF4-253	ENST00000626466	GCC1	Q96CN9	775 aa		13.55	□□□□□ -0.24
TCF4-253	ENST00000626466	ZNF594	Q96JF6	807 aa	Predicted RBP	13.55	□□□□□ -0.24
TCF4-253	ENST00000626466	ECM29	Q5VYK3	1845 aa		13.55	□□□□□ -0.24
TCF4-253	ENST00000626466	ANKRD18B	A2A2Z9	1011 aa		13.54	□□□□□ -0.24
TCF4-253	ENST00000626466	TESPA1	A2RU30	521 aa	Predicted RBP	13.54	□□□□□ -0.24
TCF4-253	ENST00000626466		F6X3S4	739 aa		13.54	□□□□□ -0.24
TCF4-253	ENST00000626466	FXR1	P51114	621 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
TCF4-253	ENST00000626466	GRIK5	Q16478	980 aa		13.54	□□□□□ -0.24
TCF4-253	ENST00000626466	DNAAF4	Q8WXU2	420 aa		13.54	□□□□□ -0.24
TCF4-253	ENST00000626466	BRI3BP	Q8WY22	251 aa		13.54	□□□□□ -0.24
TCF4-253	ENST00000626466	OPTN	Q96CV9	577 aa		13.54	□□□□□ -0.24
TCF4-253	ENST00000626466	MS4A4A	Q96JQ5	239 aa		13.54	□□□□□ -0.24
TCF4-253	ENST00000626466	EFCC1	Q9HA90	598 aa		13.54	□□□□□ -0.24
TCF4-253	ENST00000626466	ZSWIM8	A7E2V4	1837 aa		13.54	□□□□□ -0.24
TCF4-253	ENST00000626466	PLIN1	O60240	522 aa		13.53	□□□□□ -0.24
TCF4-253	ENST00000626466	IREB2	P48200	963 aa	Known RBP	13.53	□□□□□ -0.24
TCF4-253	ENST00000626466	SP3	Q02447	781 aa		13.53	□□□□□ -0.24
TCF4-253	ENST00000626466	FKBP5	Q13451	457 aa	Predicted RBP	13.53	□□□□□ -0.24
TCF4-253	ENST00000626466	SUPT20HL1	Q3ZLR7	823 aa		13.53	□□□□□ -0.24
TCF4-253	ENST00000626466	INTS3	Q68E01	1043 aa	Known RBP	13.53	□□□□□ -0.24
TCF4-253	ENST00000626466	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	13.53	□□□□□ -0.24
TCF4-253	ENST00000626466	LINS1	Q8NG48	757 aa		13.53	□□□□□ -0.24
TCF4-253	ENST00000626466	TEPSIN	Q96N21	525 aa		13.53	□□□□□ -0.24
TCF4-253	ENST00000626466	TDRD3	Q9H7E2	651 aa	Known RBP	13.53	□□□□□ -0.24
TCF4-253	ENST00000626466	ZNF70	Q9UC06	446 aa	Predicted RBP	13.53	□□□□□ -0.24
TCF4-253	ENST00000626466	CHMP3	Q9Y3E7	222 aa		13.53	□□□□□ -0.24
TCF4-253	ENST00000626466	PTCH2	Q9Y6C5	1203 aa		13.53	□□□□□ -0.24
TCF4-253	ENST00000626466	MYC	P01106	439 aa	Predicted RBP	13.52	□□□□□ -0.25
TCF4-253	ENST00000626466	RBM5	P52756	815 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
TCF4-253	ENST00000626466	SPDYE2	Q495Y8	402 aa		13.52	□□□□□ -0.25
TCF4-253	ENST00000626466	ZNF804A	Q7Z570	1209 aa		13.52	□□□□□ -0.25
TCF4-253	ENST00000626466	WWC1	Q8IX03	1113 aa		13.52	□□□□□ -0.25
TCF4-253	ENST00000626466	ANKRD13A	Q8IZ07	590 aa		13.52	□□□□□ -0.25
TCF4-253	ENST00000626466	ZNF333	Q96JL9	665 aa		13.52	□□□□□ -0.25
TCF4-253	ENST00000626466	TMEM39B	Q9GZU3	492 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms