RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 C9orf78Q9NZ63 289 aaPredicted RBP23.98■■□□□ 1.43
CDX1-202ENST00000616154 FKBP1AP62942 108 aaKnown RBP23.97■■□□□ 1.43
CDX1-202ENST00000616154 MLLT1Q03111 559 aaPredicted RBP23.97■■□□□ 1.43
CDX1-202ENST00000616154 TAF7LQ5H9L4 462 aa23.97■■□□□ 1.43
CDX1-202ENST00000616154 ZNF594Q96JF6 807 aaPredicted RBP23.97■■□□□ 1.43
CDX1-202ENST00000616154 SLFN5Q08AF3 891 aa23.96■■□□□ 1.43
CDX1-202ENST00000616154 DLGAP5Q15398 846 aa23.96■■□□□ 1.43
CDX1-202ENST00000616154 LDHAL6AQ6ZMR3 332 aa23.96■■□□□ 1.43
CDX1-202ENST00000616154 SRCIN1Q9C0H9 1055 aa23.96■■□□□ 1.43
CDX1-202ENST00000616154 ARMC9Q7Z3E5 817 aa23.95■■□□□ 1.42
CDX1-202ENST00000616154 TRMT2AQ8IZ69 625 aaKnown RBP23.95■■□□□ 1.42
CDX1-202ENST00000616154 CNNM1Q9NRU3 951 aa23.95■■□□□ 1.42
CDX1-202ENST00000616154 SLC4A10Q6U841 1118 aa23.94■■□□□ 1.42
CDX1-202ENST00000616154 ARAP2Q8WZ64 1704 aa23.94■■□□□ 1.42
CDX1-202ENST00000616154 TM4SF4P48230 202 aa23.93■■□□□ 1.42
CDX1-202ENST00000616154 PTPN12Q05209 780 aaKnown RBP23.93■■□□□ 1.42
CDX1-202ENST00000616154 LDLRAD1Q5T700 205 aa23.93■■□□□ 1.42
CDX1-202ENST00000616154 CTU1Q7Z7A3 348 aaKnown RBP23.93■■□□□ 1.42
CDX1-202ENST00000616154 DEFB129Q9H1M3 183 aa23.93■■□□□ 1.42
CDX1-202ENST00000616154 PPP2R3BQ9Y5P8 575 aa23.93■■□□□ 1.42
CDX1-202ENST00000616154 LAMB1P07942 1786 aa23.92■■□□□ 1.42
CDX1-202ENST00000616154 PLIN1O60240 522 aa23.92■■□□□ 1.42
CDX1-202ENST00000616154 SSC5DA1L4H1 1573 aa23.91■■□□□ 1.42
CDX1-202ENST00000616154 SPDYE2BA6NHP3 402 aa23.91■■□□□ 1.42
CDX1-202ENST00000616154 F8W031 263 aaPredicted RBP23.91■■□□□ 1.42
CDX1-202ENST00000616154 SPDYE6P0CI01 402 aa23.91■■□□□ 1.42
CDX1-202ENST00000616154 PRKG1Q13976 671 aa23.91■■□□□ 1.42
CDX1-202ENST00000616154 CFAP100Q494V2 611 aa23.91■■□□□ 1.42
CDX1-202ENST00000616154 KAZALD1Q96I82 304 aa23.91■■□□□ 1.42
CDX1-202ENST00000616154 SUCLG2Q96I99 432 aa23.91■■□□□ 1.42
CDX1-202ENST00000616154 ANGEL1Q9UNK9 670 aaKnown RBP23.91■■□□□ 1.42
CDX1-202ENST00000616154 PCDHAC2Q9Y5I4 1007 aa23.91■■□□□ 1.42
CDX1-202ENST00000616154 UTYO14607 1347 aa23.91■■□□□ 1.42
CDX1-202ENST00000616154 FAM205AQ6ZU69 1335 aa23.91■■□□□ 1.42
CDX1-202ENST00000616154 MYO1BO43795 1136 aa23.9■■□□□ 1.42
CDX1-202ENST00000616154 SREBF2Q12772 1141 aa23.9■■□□□ 1.42
CDX1-202ENST00000616154 UBE4AQ14139 1066 aa23.9■■□□□ 1.42
CDX1-202ENST00000616154 JAG2Q9Y219 1238 aa23.9■■□□□ 1.42
CDX1-202ENST00000616154 NBPF7P0C2Y1 421 aaPredicted RBP23.89■■□□□ 1.42
CDX1-202ENST00000616154 MKRN3Q13064 507 aaKnown RBP23.89■■□□□ 1.42
CDX1-202ENST00000616154 MAP3K11Q16584 847 aa23.89■■□□□ 1.42
CDX1-202ENST00000616154 PRMT6Q96LA8 375 aaPredicted RBP23.89■■□□□ 1.42
CDX1-202ENST00000616154 TBC1D8O95759 1140 aa23.88■■□□□ 1.41
CDX1-202ENST00000616154 NOM1Q5C9Z4 860 aaKnown RBP23.88■■□□□ 1.41
CDX1-202ENST00000616154 SPRYD7Q5W111 196 aa23.88■■□□□ 1.41
CDX1-202ENST00000616154 TDRD7Q8NHU6 1098 aaKnown RBP23.88■■□□□ 1.41
CDX1-202ENST00000616154 MRPL50Q8N5N7 158 aaKnown RBP23.87■■□□□ 1.41
CDX1-202ENST00000616154 ZNF296Q8WUU4 475 aaPredicted RBP23.87■■□□□ 1.41
CDX1-202ENST00000616154 CDCA7LQ96GN5 454 aa23.87■■□□□ 1.41
CDX1-202ENST00000616154 CFHR5Q9BXR6 569 aa23.87■■□□□ 1.41
CDX1-202ENST00000616154 PUS3Q9BZE2 481 aaKnown RBP23.87■■□□□ 1.41
CDX1-202ENST00000616154 CLRN2A0PK11 232 aa23.86■■□□□ 1.41
CDX1-202ENST00000616154 HIBADHP31937 336 aaKnown RBP23.86■■□□□ 1.41
CDX1-202ENST00000616154 RABL6Q3YEC7 729 aaPredicted RBP23.86■■□□□ 1.41
CDX1-202ENST00000616154 FAM84BQ96KN1 310 aaPredicted RBP23.86■■□□□ 1.41
CDX1-202ENST00000616154 FZD1Q9UP38 647 aa23.86■■□□□ 1.41
CDX1-202ENST00000616154 RIPOR2Q9Y4F9 1068 aa23.86■■□□□ 1.41
CDX1-202ENST00000616154 AOX1Q06278 1338 aa23.86■■□□□ 1.41
CDX1-202ENST00000616154 MROH5Q6ZUA9 1318 aa23.86■■□□□ 1.41
CDX1-202ENST00000616154 UNCXA6NJT0 531 aa23.85■■□□□ 1.41
CDX1-202ENST00000616154 PPP1R12BO60237 982 aaPredicted RBP23.85■■□□□ 1.41
CDX1-202ENST00000616154 CT47B1P0C2W7 299 aaPredicted RBP23.85■■□□□ 1.41
CDX1-202ENST00000616154 GYG1P46976 350 aa23.85■■□□□ 1.41
CDX1-202ENST00000616154 SUPT20HL1Q3ZLR7 823 aa23.85■■□□□ 1.41
CDX1-202ENST00000616154 MFSD14BQ5SR56 506 aa23.85■■□□□ 1.41
CDX1-202ENST00000616154 BICC1Q9H694 974 aaKnown RBP23.85■■□□□ 1.41
CDX1-202ENST00000616154 VEZTQ9HBM0 779 aa23.85■■□□□ 1.41
CDX1-202ENST00000616154 PTPRCP08575 1304 aa23.85■■□□□ 1.41
CDX1-202ENST00000616154 GPR25O00155 361 aa23.84■■□□□ 1.41
CDX1-202ENST00000616154 RBM5P52756 815 aaKnown RBP eCLIP23.84■■□□□ 1.41
CDX1-202ENST00000616154 PKN2Q16513 984 aaKnown RBP23.84■■□□□ 1.41
CDX1-202ENST00000616154 ALDH1L2Q3SY69 923 aa23.84■■□□□ 1.41
CDX1-202ENST00000616154 TNRC18O15417 2968 aaPredicted RBP23.84■■□□□ 1.41
CDX1-202ENST00000616154 PDE4DIPQ5VU43 2346 aa23.84■■□□□ 1.41
CDX1-202ENST00000616154 OTOFQ9HC10 1997 aa23.84■■□□□ 1.41
CDX1-202ENST00000616154 ANKRD44Q8N8A2 993 aa23.84■■□□□ 1.41
CDX1-202ENST00000616154 SSH1Q8WYL5 1049 aa23.84■■□□□ 1.41
CDX1-202ENST00000616154 SLC10A4Q96EP9 437 aa23.84■■□□□ 1.41
CDX1-202ENST00000616154 SERPINA10Q9UK55 444 aa23.84■■□□□ 1.41
CDX1-202ENST00000616154 TTF2Q9UNY4 1162 aaKnown RBP23.84■■□□□ 1.41
CDX1-202ENST00000616154 MANSC4A6NHS7 340 aaPredicted RBP23.83■■□□□ 1.4
CDX1-202ENST00000616154 ZBTB48P10074 688 aaPredicted RBP23.83■■□□□ 1.4
CDX1-202ENST00000616154 NBPF12Q5TAG4 269 aaPredicted RBP23.83■■□□□ 1.4
CDX1-202ENST00000616154 CLMNQ96JQ2 1002 aa23.83■■□□□ 1.4
CDX1-202ENST00000616154 ALDH1A1P00352 501 aa23.82■■□□□ 1.4
CDX1-202ENST00000616154 SOX10P56693 466 aa23.82■■□□□ 1.4
CDX1-202ENST00000616154 INHBEP58166 350 aa23.82■■□□□ 1.4
CDX1-202ENST00000616154 RASA3Q14644 834 aa23.82■■□□□ 1.4
CDX1-202ENST00000616154 SPDYE2Q495Y8 402 aa23.82■■□□□ 1.4
CDX1-202ENST00000616154 WNK4Q96J92 1243 aa23.82■■□□□ 1.4
CDX1-202ENST00000616154 HPS5Q9UPZ3 1129 aa23.82■■□□□ 1.4
CDX1-202ENST00000616154 TNFAIP1Q13829 316 aa23.81■■□□□ 1.4
CDX1-202ENST00000616154 FBXO33Q7Z6M2 555 aa23.81■■□□□ 1.4
CDX1-202ENST00000616154 IREB2P48200 963 aaKnown RBP23.8■■□□□ 1.4
CDX1-202ENST00000616154 LRRC24Q50LG9 513 aa23.8■■□□□ 1.4
CDX1-202ENST00000616154 VGLL2Q8N8G2 317 aa23.8■■□□□ 1.4
CDX1-202ENST00000616154 R3HDMLQ9H3Y0 253 aa23.8■■□□□ 1.4
CDX1-202ENST00000616154 ZNF70Q9UC06 446 aaPredicted RBP23.8■■□□□ 1.4
CDX1-202ENST00000616154 FKTNO75072 461 aa23.79■■□□□ 1.4
CDX1-202ENST00000616154 USP2O75604 605 aaPredicted RBP23.79■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms