RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 TRPA1O75762 1119 aa14.39□□□□□ -0.11
HIF3A-217ENST00000600236 NBPF7P0C2Y1 421 aaPredicted RBP14.39□□□□□ -0.11
HIF3A-217ENST00000600236 DGKZQ13574 1117 aa14.39□□□□□ -0.11
HIF3A-217ENST00000600236 PRAMEF18Q5VWM3 479 aa14.39□□□□□ -0.11
HIF3A-217ENST00000600236 MTMR14Q8NCE2 650 aa14.39□□□□□ -0.11
HIF3A-217ENST00000600236 ZBED3Q96IU2 234 aaPredicted RBP14.39□□□□□ -0.11
HIF3A-217ENST00000600236 CSRNP1Q96S65 589 aa14.39□□□□□ -0.11
HIF3A-217ENST00000600236 MCOLN1Q9GZU1 580 aa14.39□□□□□ -0.11
HIF3A-217ENST00000600236 PPP2R3BQ9Y5P8 575 aa14.39□□□□□ -0.11
HIF3A-217ENST00000600236 UBE2Q2LH0YL09 131 aa14.38□□□□□ -0.11
HIF3A-217ENST00000600236 RBM5P52756 815 aaKnown RBP eCLIP14.38□□□□□ -0.11
HIF3A-217ENST00000600236 VPS37DQ86XT2 251 aa14.38□□□□□ -0.11
HIF3A-217ENST00000600236 CERS5Q8N5B7 392 aa14.38□□□□□ -0.11
HIF3A-217ENST00000600236 HIBADHP31937 336 aaKnown RBP14.37□□□□□ -0.11
HIF3A-217ENST00000600236 SLFN5Q08AF3 891 aa14.37□□□□□ -0.11
HIF3A-217ENST00000600236 ALDH1L2Q3SY69 923 aa14.37□□□□□ -0.11
HIF3A-217ENST00000600236 RABL6Q3YEC7 729 aaPredicted RBP14.37□□□□□ -0.11
HIF3A-217ENST00000600236 CFAP100Q494V2 611 aa14.37□□□□□ -0.11
HIF3A-217ENST00000600236 MOB2Q70IA6 237 aa14.37□□□□□ -0.11
HIF3A-217ENST00000600236 SSH1Q8WYL5 1049 aa14.37□□□□□ -0.11
HIF3A-217ENST00000600236 DEFB129Q9H1M3 183 aa14.37□□□□□ -0.11
HIF3A-217ENST00000600236 BICC1Q9H694 974 aaKnown RBP14.37□□□□□ -0.11
HIF3A-217ENST00000600236 PPP1R12BO60237 982 aaPredicted RBP14.36□□□□□ -0.11
HIF3A-217ENST00000600236 SREBF2Q12772 1141 aa14.36□□□□□ -0.11
HIF3A-217ENST00000600236 CAVIN4Q5BKX8 364 aa14.36□□□□□ -0.11
HIF3A-217ENST00000600236 METTL24Q5JXM2 366 aa14.36□□□□□ -0.11
HIF3A-217ENST00000600236 MFSD14BQ5SR56 506 aa14.36□□□□□ -0.11
HIF3A-217ENST00000600236 TDRD7Q8NHU6 1098 aaKnown RBP14.36□□□□□ -0.11
HIF3A-217ENST00000600236 KAZALD1Q96I82 304 aa14.36□□□□□ -0.11
HIF3A-217ENST00000600236 VEZTQ9HBM0 779 aa14.36□□□□□ -0.11
HIF3A-217ENST00000600236 JAG2Q9Y219 1238 aa14.36□□□□□ -0.11
HIF3A-217ENST00000600236 FAM205AQ6ZU69 1335 aa14.36□□□□□ -0.11
HIF3A-217ENST00000600236 SPDYE2BA6NHP3 402 aa14.35□□□□□ -0.11
HIF3A-217ENST00000600236 CT47B1P0C2W7 299 aaPredicted RBP14.35□□□□□ -0.11
HIF3A-217ENST00000600236 SPDYE6P0CI01 402 aa14.35□□□□□ -0.11
HIF3A-217ENST00000600236 GYG1P46976 350 aa14.35□□□□□ -0.11
HIF3A-217ENST00000600236 TNFAIP1Q13829 316 aa14.35□□□□□ -0.11
HIF3A-217ENST00000600236 PRKG1Q13976 671 aa14.35□□□□□ -0.11
HIF3A-217ENST00000600236 SUPT20HL1Q3ZLR7 823 aa14.35□□□□□ -0.11
HIF3A-217ENST00000600236 PUS3Q9BZE2 481 aaKnown RBP14.35□□□□□ -0.11
HIF3A-217ENST00000600236 SMC4Q9NTJ3 1288 aa14.35□□□□□ -0.11
HIF3A-217ENST00000600236 ANGEL1Q9UNK9 670 aaKnown RBP14.35□□□□□ -0.11
HIF3A-217ENST00000600236 RIPOR2Q9Y4F9 1068 aa14.35□□□□□ -0.11
HIF3A-217ENST00000600236 CLRN2A0PK11 232 aa14.34□□□□□ -0.11
HIF3A-217ENST00000600236 FRAT2O75474 233 aaPredicted RBP14.34□□□□□ -0.11
HIF3A-217ENST00000600236 FAM84BQ96KN1 310 aaPredicted RBP14.34□□□□□ -0.11
HIF3A-217ENST00000600236 SERPINA10Q9UK55 444 aa14.34□□□□□ -0.11
HIF3A-217ENST00000600236 TTF2Q9UNY4 1162 aaKnown RBP14.34□□□□□ -0.11
HIF3A-217ENST00000600236 POLR2AP24928 1970 aaKnown RBP14.34□□□□□ -0.11
HIF3A-217ENST00000600236 ZNF646O15015 1829 aaPredicted RBP14.34□□□□□ -0.11
HIF3A-217ENST00000600236 UNCXA6NJT0 531 aa14.33□□□□□ -0.12
HIF3A-217ENST00000600236 PTPN12Q05209 780 aaKnown RBP14.33□□□□□ -0.12
HIF3A-217ENST00000600236 MAP3K11Q16584 847 aa14.33□□□□□ -0.12
HIF3A-217ENST00000600236 MIER1Q8N108 512 aa14.33□□□□□ -0.12
HIF3A-217ENST00000600236 ANKRD44Q8N8A2 993 aa14.33□□□□□ -0.12
HIF3A-217ENST00000600236 TBC1D22AQ8WUA7 517 aa14.33□□□□□ -0.12
HIF3A-217ENST00000600236 PRMT6Q96LA8 375 aaPredicted RBP14.33□□□□□ -0.12
HIF3A-217ENST00000600236 HDAC5Q9UQL6 1122 aa14.33□□□□□ -0.12
HIF3A-217ENST00000600236 PDE8BO95263 885 aa14.32□□□□□ -0.12
HIF3A-217ENST00000600236 IFIT1P09914 478 aaKnown RBP14.32□□□□□ -0.12
HIF3A-217ENST00000600236 IREB2P48200 963 aaKnown RBP14.32□□□□□ -0.12
HIF3A-217ENST00000600236 TM4SF4P48230 202 aa14.32□□□□□ -0.12
HIF3A-217ENST00000600236 MKRN3Q13064 507 aaKnown RBP14.32□□□□□ -0.12
HIF3A-217ENST00000600236 LRRC24Q50LG9 513 aa14.32□□□□□ -0.12
HIF3A-217ENST00000600236 LDLRAD1Q5T700 205 aa14.32□□□□□ -0.12
HIF3A-217ENST00000600236 CTU1Q7Z7A3 348 aaKnown RBP14.32□□□□□ -0.12
HIF3A-217ENST00000600236 SLC10A4Q96EP9 437 aa14.32□□□□□ -0.12
HIF3A-217ENST00000600236 USP44Q9H0E7 712 aa14.32□□□□□ -0.12
HIF3A-217ENST00000600236 CCER2I3L3R5 266 aa14.31□□□□□ -0.12
HIF3A-217ENST00000600236 ALDH1A1P00352 501 aa14.31□□□□□ -0.12
HIF3A-217ENST00000600236 TNNI2P48788 182 aa14.31□□□□□ -0.12
HIF3A-217ENST00000600236 INHBEP58166 350 aa14.31□□□□□ -0.12
HIF3A-217ENST00000600236 PUM3Q15397 648 aaKnown RBP14.31□□□□□ -0.12
HIF3A-217ENST00000600236 SPDYE2Q495Y8 402 aa14.31□□□□□ -0.12
HIF3A-217ENST00000600236 SPRYD7Q5W111 196 aa14.31□□□□□ -0.12
HIF3A-217ENST00000600236 FBXO33Q7Z6M2 555 aa14.31□□□□□ -0.12
HIF3A-217ENST00000600236 CDCA7LQ96GN5 454 aa14.31□□□□□ -0.12
HIF3A-217ENST00000600236 API5Q9BZZ5 524 aaKnown RBP14.31□□□□□ -0.12
HIF3A-217ENST00000600236 PCDHAC2Q9Y5I4 1007 aa14.31□□□□□ -0.12
HIF3A-217ENST00000600236 A0A1B0GUL6 1792 aa14.3□□□□□ -0.12
HIF3A-217ENST00000600236 MANSC4A6NHS7 340 aaPredicted RBP14.3□□□□□ -0.12
HIF3A-217ENST00000600236 UBTFL1P0CB47 393 aaPredicted RBP14.3□□□□□ -0.12
HIF3A-217ENST00000600236 ZBTB48P10074 688 aaPredicted RBP14.3□□□□□ -0.12
HIF3A-217ENST00000600236 CRKP46108 304 aa14.3□□□□□ -0.12
HIF3A-217ENST00000600236 MLLT1Q03111 559 aaPredicted RBP14.3□□□□□ -0.12
HIF3A-217ENST00000600236 CHAF1AQ13111 956 aaPredicted RBP14.3□□□□□ -0.12
HIF3A-217ENST00000600236 RASA3Q14644 834 aa14.3□□□□□ -0.12
HIF3A-217ENST00000600236 NOM1Q5C9Z4 860 aaKnown RBP14.3□□□□□ -0.12
HIF3A-217ENST00000600236 ZNF70Q9UC06 446 aaPredicted RBP14.3□□□□□ -0.12
HIF3A-217ENST00000600236 MAST3O60307 1309 aa14.3□□□□□ -0.12
HIF3A-217ENST00000600236 KIF16BQ96L93 1317 aa14.3□□□□□ -0.12
HIF3A-217ENST00000600236 EYA2O00167 538 aa14.29□□□□□ -0.12
HIF3A-217ENST00000600236 TBC1D8O95759 1140 aa14.29□□□□□ -0.12
HIF3A-217ENST00000600236 SLC5A1P13866 664 aa14.29□□□□□ -0.12
HIF3A-217ENST00000600236 HDLBPQ00341 1268 aaKnown RBP14.29□□□□□ -0.12
HIF3A-217ENST00000600236 PKN2Q16513 984 aaKnown RBP14.29□□□□□ -0.12
HIF3A-217ENST00000600236 DZIP1LQ8IYY4 767 aaKnown RBP14.29□□□□□ -0.12
HIF3A-217ENST00000600236 ANKRD13AQ8IZ07 590 aa14.29□□□□□ -0.12
HIF3A-217ENST00000600236 VGLL2Q8N8G2 317 aa14.29□□□□□ -0.12
HIF3A-217ENST00000600236 KLHDC4Q8TBB5 520 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms