RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 FRAT1Q92837 279 aaPredicted RBP12.95□□□□□ -0.34
SHKBP1-210ENST00000595874 BEGAINQ9BUH8 593 aa12.95□□□□□ -0.34
SHKBP1-210ENST00000595874 BCAR3O75815 825 aa12.94□□□□□ -0.34
SHKBP1-210ENST00000595874 MAP2K1Q02750 393 aaPredicted RBP12.94□□□□□ -0.34
SHKBP1-210ENST00000595874 GRIK5Q16478 980 aa12.94□□□□□ -0.34
SHKBP1-210ENST00000595874 RGMBQ6NW40 437 aa12.94□□□□□ -0.34
SHKBP1-210ENST00000595874 VEZTQ9HBM0 779 aa12.94□□□□□ -0.34
SHKBP1-210ENST00000595874 HDAC9Q9UKV0 1011 aa12.94□□□□□ -0.34
SHKBP1-210ENST00000595874 UTYO14607 1347 aa12.93□□□□□ -0.34
SHKBP1-210ENST00000595874 RARSP54136 660 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-210ENST00000595874 DLGAP5Q15398 846 aa12.93□□□□□ -0.34
SHKBP1-210ENST00000595874 CFAP100Q494V2 611 aa12.93□□□□□ -0.34
SHKBP1-210ENST00000595874 CLUAP1Q96AJ1 413 aa12.93□□□□□ -0.34
SHKBP1-210ENST00000595874 PA2G4Q9UQ80 394 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-210ENST00000595874 RIPOR2Q9Y4F9 1068 aa12.93□□□□□ -0.34
SHKBP1-210ENST00000595874 MYO3BQ8WXR4 1341 aa12.92□□□□□ -0.34
SHKBP1-210ENST00000595874 THSD7BQ9C0I4 1608 aa12.92□□□□□ -0.34
SHKBP1-210ENST00000595874 FRAT2O75474 233 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-210ENST00000595874 UBTFL1P0CB47 393 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-210ENST00000595874 IL1R1P14778 569 aa12.92□□□□□ -0.34
SHKBP1-210ENST00000595874 HIBADHP31937 336 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-210ENST00000595874 KIF23Q02241 960 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-210ENST00000595874 RABL6Q3YEC7 729 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-210ENST00000595874 VPS37DQ86XT2 251 aa12.92□□□□□ -0.34
SHKBP1-210ENST00000595874 FAM84BQ96KN1 310 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-210ENST00000595874 MEIS3Q99687 375 aa12.92□□□□□ -0.34
SHKBP1-210ENST00000595874 LRRFIP2Q9Y608 721 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-210ENST00000595874 FAM155AB1AL88 458 aaPredicted RBP12.91□□□□□ -0.34
SHKBP1-210ENST00000595874 BCAMP50895 628 aa12.91□□□□□ -0.34
SHKBP1-210ENST00000595874 MFSD14BQ5SR56 506 aa12.91□□□□□ -0.34
SHKBP1-210ENST00000595874 MROH5Q6ZUA9 1318 aa12.9□□□□□ -0.34
SHKBP1-210ENST00000595874 ZNF609O15014 1411 aa12.9□□□□□ -0.34
SHKBP1-210ENST00000595874 RFX5P48382 616 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-210ENST00000595874 UBE4AQ14139 1066 aa12.9□□□□□ -0.34
SHKBP1-210ENST00000595874 C15orf52Q6ZUT6 534 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-210ENST00000595874 RASAL3Q86YV0 1011 aa12.9□□□□□ -0.34
SHKBP1-210ENST00000595874 PRMT6Q96LA8 375 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-210ENST00000595874 API5Q9BZZ5 524 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-210ENST00000595874 TTF2Q9UNY4 1162 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-210ENST00000595874 TRPA1O75762 1119 aa12.89□□□□□ -0.35
SHKBP1-210ENST00000595874 MAP2K2P36507 400 aa12.89□□□□□ -0.35
SHKBP1-210ENST00000595874 CACNB3P54284 484 aa12.89□□□□□ -0.35
SHKBP1-210ENST00000595874 TDRD7Q8NHU6 1098 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-210ENST00000595874 TDRD3Q9H7E2 651 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-210ENST00000595874 PRDM10Q9NQV6 1147 aa12.89□□□□□ -0.35
SHKBP1-210ENST00000595874 ANGEL1Q9UNK9 670 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-210ENST00000595874 PITPNM2Q9BZ72 1349 aa12.88□□□□□ -0.35
SHKBP1-210ENST00000595874 PCNTO95613 3336 aa12.88□□□□□ -0.35
SHKBP1-210ENST00000595874 TCP10L2B9ZVM9 353 aa12.88□□□□□ -0.35
SHKBP1-210ENST00000595874 EYA2O00167 538 aa12.88□□□□□ -0.35
SHKBP1-210ENST00000595874 PDE8BO95263 885 aa12.88□□□□□ -0.35
SHKBP1-210ENST00000595874 SLC10A3P09131 477 aa12.88□□□□□ -0.35
SHKBP1-210ENST00000595874 NF2P35240 595 aa12.88□□□□□ -0.35
SHKBP1-210ENST00000595874 PTPN12Q05209 780 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-210ENST00000595874 NOGQ13253 232 aa12.88□□□□□ -0.35
SHKBP1-210ENST00000595874 APOBEC3FQ8IUX4 373 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-210ENST00000595874 CDAN1Q8IWY9 1227 aa12.88□□□□□ -0.35
SHKBP1-210ENST00000595874 VGLL2Q8N8G2 317 aa12.88□□□□□ -0.35
SHKBP1-210ENST00000595874 PAPPA2Q9BXP8 1791 aa12.88□□□□□ -0.35
SHKBP1-210ENST00000595874 CASP8AP2Q9UKL3 1982 aa12.88□□□□□ -0.35
SHKBP1-210ENST00000595874 ADORA1P30542 326 aa12.87□□□□□ -0.35
SHKBP1-210ENST00000595874 BRPF1P55201 1214 aaPredicted RBP12.87□□□□□ -0.35
SHKBP1-210ENST00000595874 CAVIN4Q5BKX8 364 aa12.87□□□□□ -0.35
SHKBP1-210ENST00000595874 ATG9AQ7Z3C6 839 aa12.87□□□□□ -0.35
SHKBP1-210ENST00000595874 ZBED3Q96IU2 234 aaPredicted RBP12.87□□□□□ -0.35
SHKBP1-210ENST00000595874 HHIPL1Q96JK4 782 aa12.87□□□□□ -0.35
SHKBP1-210ENST00000595874 DEFB129Q9H1M3 183 aa12.87□□□□□ -0.35
SHKBP1-210ENST00000595874 ECM29Q5VYK3 1845 aa12.86□□□□□ -0.35
SHKBP1-210ENST00000595874 SPDYE2BA6NHP3 402 aa12.86□□□□□ -0.35
SHKBP1-210ENST00000595874 IFIT1P09914 478 aaKnown RBP12.86□□□□□ -0.35
SHKBP1-210ENST00000595874 SPDYE6P0CI01 402 aa12.86□□□□□ -0.35
SHKBP1-210ENST00000595874 SLC5A1P13866 664 aa12.86□□□□□ -0.35
SHKBP1-210ENST00000595874 TRIM27P14373 513 aa12.86□□□□□ -0.35
SHKBP1-210ENST00000595874 CRKP46108 304 aa12.86□□□□□ -0.35
SHKBP1-210ENST00000595874 NBPF12Q5TAG4 269 aaPredicted RBP12.86□□□□□ -0.35
SHKBP1-210ENST00000595874 FBXO33Q7Z6M2 555 aa12.86□□□□□ -0.35
SHKBP1-210ENST00000595874 CCDC102AQ96A19 550 aa12.86□□□□□ -0.35
SHKBP1-210ENST00000595874 CSRNP1Q96S65 589 aa12.86□□□□□ -0.35
SHKBP1-210ENST00000595874 C1orf115Q9H7X2 142 aa12.86□□□□□ -0.35
SHKBP1-210ENST00000595874 FAM205AQ6ZU69 1335 aa12.86□□□□□ -0.35
SHKBP1-210ENST00000595874 ARAP2Q8WZ64 1704 aa12.85□□□□□ -0.35
SHKBP1-210ENST00000595874 MYO1BO43795 1136 aa12.85□□□□□ -0.35
SHKBP1-210ENST00000595874 PUM3Q15397 648 aaKnown RBP12.85□□□□□ -0.35
SHKBP1-210ENST00000595874 ATP2B3Q16720 1220 aa12.85□□□□□ -0.35
SHKBP1-210ENST00000595874 TMEM57Q8N5G2 664 aa12.85□□□□□ -0.35
SHKBP1-210ENST00000595874 CLMNQ96JQ2 1002 aa12.85□□□□□ -0.35
SHKBP1-210ENST00000595874 RNF186Q9NXI6 227 aa12.85□□□□□ -0.35
SHKBP1-210ENST00000595874 ZNF70Q9UC06 446 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-210ENST00000595874 MYH13Q9UKX3 1938 aa12.85□□□□□ -0.35
SHKBP1-210ENST00000595874 SSC5DA1L4H1 1573 aa12.85□□□□□ -0.35
SHKBP1-210ENST00000595874 KIF16BQ96L93 1317 aa12.85□□□□□ -0.35
SHKBP1-210ENST00000595874 CCDC85CA6NKD9 419 aa12.84□□□□□ -0.35
SHKBP1-210ENST00000595874 SRGAP3O43295 1099 aa12.84□□□□□ -0.35
SHKBP1-210ENST00000595874 TBC1D8O95759 1140 aa12.84□□□□□ -0.35
SHKBP1-210ENST00000595874 CT47B1P0C2W7 299 aaPredicted RBP12.84□□□□□ -0.35
SHKBP1-210ENST00000595874 FGFR2P21802 821 aa12.84□□□□□ -0.35
SHKBP1-210ENST00000595874 RASA3Q14644 834 aa12.84□□□□□ -0.35
SHKBP1-210ENST00000595874 ARMC9Q7Z3E5 817 aa12.84□□□□□ -0.35
SHKBP1-210ENST00000595874 DZIP1LQ8IYY4 767 aaKnown RBP12.84□□□□□ -0.35
SHKBP1-210ENST00000595874 TMEM39BQ9GZU3 492 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms