RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 CA12O43570 354 aa13.69□□□□□ -0.22
LIG3-214ENST00000592244 SLC5A1P13866 664 aa13.69□□□□□ -0.22
LIG3-214ENST00000592244 NOGQ13253 232 aa13.69□□□□□ -0.22
LIG3-214ENST00000592244 LRRC24Q50LG9 513 aa13.69□□□□□ -0.22
LIG3-214ENST00000592244 TDRD7Q8NHU6 1098 aaKnown RBP13.69□□□□□ -0.22
LIG3-214ENST00000592244 TBC1D22AQ8WUA7 517 aa13.69□□□□□ -0.22
LIG3-214ENST00000592244 WBP1LQ9NX94 342 aa13.69□□□□□ -0.22
LIG3-214ENST00000592244 SPEF2Q9C093 1822 aa13.69□□□□□ -0.22
LIG3-214ENST00000592244 ZBED9Q6R2W3 1325 aa13.68□□□□□ -0.22
LIG3-214ENST00000592244 FAM205AQ6ZU69 1335 aa13.68□□□□□ -0.22
LIG3-214ENST00000592244 CIAO1O76071 339 aa13.68□□□□□ -0.22
LIG3-214ENST00000592244 GYG1P46976 350 aa13.68□□□□□ -0.22
LIG3-214ENST00000592244 RBM5P52756 815 aaKnown RBP eCLIP13.68□□□□□ -0.22
LIG3-214ENST00000592244 NBPF9Q3BBW0 867 aa13.68□□□□□ -0.22
LIG3-214ENST00000592244 MFSD14BQ5SR56 506 aa13.68□□□□□ -0.22
LIG3-214ENST00000592244 ZKSCAN2Q63HK3 967 aa13.68□□□□□ -0.22
LIG3-214ENST00000592244 RGMBQ6NW40 437 aa13.68□□□□□ -0.22
LIG3-214ENST00000592244 MTMR14Q8NCE2 650 aa13.68□□□□□ -0.22
LIG3-214ENST00000592244 FAM84BQ96KN1 310 aaPredicted RBP13.68□□□□□ -0.22
LIG3-214ENST00000592244 CEP126Q9P2H0 1117 aa13.68□□□□□ -0.22
LIG3-214ENST00000592244 SCN9AQ15858 1988 aa13.68□□□□□ -0.22
LIG3-214ENST00000592244 ASTN2O75129 1339 aaPredicted RBP13.67□□□□□ -0.22
LIG3-214ENST00000592244 F8W031 263 aaPredicted RBP13.67□□□□□ -0.22
LIG3-214ENST00000592244 IL15P40933 162 aaPredicted RBP13.67□□□□□ -0.22
LIG3-214ENST00000592244 IFFO2Q5TF58 517 aa13.67□□□□□ -0.22
LIG3-214ENST00000592244 FBXO33Q7Z6M2 555 aa13.67□□□□□ -0.22
LIG3-214ENST00000592244 FTSJ3Q8IY81 847 aaKnown RBP13.67□□□□□ -0.22
LIG3-214ENST00000592244 LPIN2Q92539 896 aa13.67□□□□□ -0.22
LIG3-214ENST00000592244 PRDM10Q9NQV6 1147 aa13.67□□□□□ -0.22
LIG3-214ENST00000592244 GNL3LQ9NVN8 582 aaKnown RBP13.67□□□□□ -0.22
LIG3-214ENST00000592244 LRRFIP2Q9Y608 721 aaKnown RBP13.67□□□□□ -0.22
LIG3-214ENST00000592244 FOXN1O15353 648 aa13.66□□□□□ -0.22
LIG3-214ENST00000592244 GNAI2P04899 355 aa13.66□□□□□ -0.22
LIG3-214ENST00000592244 TRIM27P14373 513 aa13.66□□□□□ -0.22
LIG3-214ENST00000592244 ZNF157P51786 506 aaPredicted RBP13.66□□□□□ -0.22
LIG3-214ENST00000592244 PTPN12Q05209 780 aaKnown RBP13.66□□□□□ -0.22
LIG3-214ENST00000592244 TTLL12Q14166 644 aaPredicted RBP13.66□□□□□ -0.22
LIG3-214ENST00000592244 VGLL2Q8N8G2 317 aa13.66□□□□□ -0.22
LIG3-214ENST00000592244 KLHDC4Q8TBB5 520 aa13.66□□□□□ -0.22
LIG3-214ENST00000592244 MEIS3Q99687 375 aa13.66□□□□□ -0.22
LIG3-214ENST00000592244 SERPINA10Q9UK55 444 aa13.66□□□□□ -0.22
LIG3-214ENST00000592244 PPP2R3BQ9Y5P8 575 aa13.66□□□□□ -0.22
LIG3-214ENST00000592244 TRPM7Q96QT4 1865 aa13.65□□□□□ -0.22
LIG3-214ENST00000592244 BCAR3O75815 825 aa13.65□□□□□ -0.22
LIG3-214ENST00000592244 RFX5P48382 616 aaPredicted RBP13.65□□□□□ -0.22
LIG3-214ENST00000592244 TNFAIP1Q13829 316 aa13.65□□□□□ -0.22
LIG3-214ENST00000592244 CFAP100Q494V2 611 aa13.65□□□□□ -0.22
LIG3-214ENST00000592244 ARMC9Q7Z3E5 817 aa13.65□□□□□ -0.22
LIG3-214ENST00000592244 REM2Q8IYK8 340 aaPredicted RBP13.65□□□□□ -0.22
LIG3-214ENST00000592244 TNS4Q8IZW8 715 aa13.65□□□□□ -0.22
LIG3-214ENST00000592244 CERS5Q8N5B7 392 aa13.65□□□□□ -0.22
LIG3-214ENST00000592244 SIL1Q9H173 461 aa13.65□□□□□ -0.22
LIG3-214ENST00000592244 TTF2Q9UNY4 1162 aaKnown RBP13.65□□□□□ -0.22
LIG3-214ENST00000592244 SUGT1Q9Y2Z0 365 aa13.65□□□□□ -0.22
LIG3-214ENST00000592244 MAST3O60307 1309 aa13.64□□□□□ -0.23
LIG3-214ENST00000592244 PSME4Q14997 1843 aa13.64□□□□□ -0.23
LIG3-214ENST00000592244 COL1A1P02452 1464 aaPredicted RBP13.64□□□□□ -0.23
LIG3-214ENST00000592244 SPDYE2BA6NHP3 402 aa13.64□□□□□ -0.23
LIG3-214ENST00000592244 SRGAP3O43295 1099 aa13.64□□□□□ -0.23
LIG3-214ENST00000592244 SPDYE6P0CI01 402 aa13.64□□□□□ -0.23
LIG3-214ENST00000592244 CHAF1AQ13111 956 aaPredicted RBP13.64□□□□□ -0.23
LIG3-214ENST00000592244 ATP2B3Q16720 1220 aa13.64□□□□□ -0.23
LIG3-214ENST00000592244 SUPT20HL1Q3ZLR7 823 aa13.64□□□□□ -0.23
LIG3-214ENST00000592244 COL13A1Q5TAT6 717 aaPredicted RBP13.64□□□□□ -0.23
LIG3-214ENST00000592244 CLUAP1Q96AJ1 413 aa13.64□□□□□ -0.23
LIG3-214ENST00000592244 ZBED3Q96IU2 234 aaPredicted RBP13.64□□□□□ -0.23
LIG3-214ENST00000592244 COPRSQ9NQ92 184 aa13.64□□□□□ -0.23
LIG3-214ENST00000592244 JAG2Q9Y219 1238 aa13.64□□□□□ -0.23
LIG3-214ENST00000592244 AKAP2Q9Y2D5 859 aa13.64□□□□□ -0.23
LIG3-214ENST00000592244 PCNTO95613 3336 aa13.64□□□□□ -0.23
LIG3-214ENST00000592244 AOC2O75106 756 aa13.63□□□□□ -0.23
LIG3-214ENST00000592244 MS4A1P11836 297 aa13.63□□□□□ -0.23
LIG3-214ENST00000592244 FGFR2P21802 821 aa13.63□□□□□ -0.23
LIG3-214ENST00000592244 BCAMP50895 628 aa13.63□□□□□ -0.23
LIG3-214ENST00000592244 HDLBPQ00341 1268 aaKnown RBP13.63□□□□□ -0.23
LIG3-214ENST00000592244 DLK2Q6UY11 383 aa13.63□□□□□ -0.23
LIG3-214ENST00000592244 WDR66Q8TBY9 1149 aa13.63□□□□□ -0.23
LIG3-214ENST00000592244 DEFB129Q9H1M3 183 aa13.63□□□□□ -0.23
LIG3-214ENST00000592244 PPP1R12BO60237 982 aaPredicted RBP13.62□□□□□ -0.23
LIG3-214ENST00000592244 TNNI2P48788 182 aa13.62□□□□□ -0.23
LIG3-214ENST00000592244 LBX1P52954 281 aa13.62□□□□□ -0.23
LIG3-214ENST00000592244 MTX1Q13505 466 aa13.62□□□□□ -0.23
LIG3-214ENST00000592244 ATG9AQ7Z3C6 839 aa13.62□□□□□ -0.23
LIG3-214ENST00000592244 DZIP1LQ8IYY4 767 aaKnown RBP13.62□□□□□ -0.23
LIG3-214ENST00000592244 TEKT1Q969V4 418 aa13.62□□□□□ -0.23
LIG3-214ENST00000592244 VEZTQ9HBM0 779 aa13.62□□□□□ -0.23
LIG3-214ENST00000592244 TMOD2Q9NZR1 351 aa13.62□□□□□ -0.23
LIG3-214ENST00000592244 IQSEC3Q9UPP2 1182 aaPredicted RBP13.62□□□□□ -0.23
LIG3-214ENST00000592244 SEMA3EO15041 775 aa13.61□□□□□ -0.23
LIG3-214ENST00000592244 SLC10A3P09131 477 aa13.61□□□□□ -0.23
LIG3-214ENST00000592244 PRMT6Q96LA8 375 aaPredicted RBP13.61□□□□□ -0.23
LIG3-214ENST00000592244 MRIQ9BWK5 157 aa13.61□□□□□ -0.23
LIG3-214ENST00000592244 CLRN2A0PK11 232 aa13.6□□□□□ -0.23
LIG3-214ENST00000592244 UNCXA6NJT0 531 aa13.6□□□□□ -0.23
LIG3-214ENST00000592244 HSPA8P11142 646 aaKnown RBP13.6□□□□□ -0.23
LIG3-214ENST00000592244 CRKP46108 304 aa13.6□□□□□ -0.23
LIG3-214ENST00000592244 G3BP1Q13283 466 aaKnown RBP eCLIP13.6□□□□□ -0.23
LIG3-214ENST00000592244 PRAMEF18Q5VWM3 479 aa13.6□□□□□ -0.23
LIG3-214ENST00000592244 ITPRIPQ8IWB1 547 aa13.6□□□□□ -0.23
LIG3-214ENST00000592244 ZGPATQ8N5A5 531 aaKnown RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms