RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 MED23Q9ULK4 1368 aa25.47■■□□□ 1.67
VPS53-210ENST00000571456 ZNF804BA4D1E1 1349 aa25.47■■□□□ 1.67
VPS53-210ENST00000571456 G3BP1Q13283 466 aaKnown RBP eCLIP25.47■■□□□ 1.67
VPS53-210ENST00000571456 METTL24Q5JXM2 366 aa25.47■■□□□ 1.67
VPS53-210ENST00000571456 KLHDC4Q8TBB5 520 aa25.47■■□□□ 1.67
VPS53-210ENST00000571456 GCC1Q96CN9 775 aa25.47■■□□□ 1.67
VPS53-210ENST00000571456 PUS3Q9BZE2 481 aaKnown RBP25.47■■□□□ 1.67
VPS53-210ENST00000571456 ZC3H12CQ9C0D7 883 aaKnown RBP25.47■■□□□ 1.67
VPS53-210ENST00000571456 POLLQ9UGP5 575 aa25.47■■□□□ 1.67
VPS53-210ENST00000571456 PDE8BO95263 885 aa25.46■■□□□ 1.67
VPS53-210ENST00000571456 LRRC24Q50LG9 513 aa25.46■■□□□ 1.67
VPS53-210ENST00000571456 C15orf52Q6ZUT6 534 aaKnown RBP25.46■■□□□ 1.67
VPS53-210ENST00000571456 ATG9AQ7Z3C6 839 aa25.46■■□□□ 1.67
VPS53-210ENST00000571456 CEP126Q9P2H0 1117 aa25.46■■□□□ 1.67
VPS53-210ENST00000571456 TNIP1Q15025 636 aa25.45■■□□□ 1.66
VPS53-210ENST00000571456 ERC1Q8IUD2 1116 aa25.44■■□□□ 1.66
VPS53-210ENST00000571456 VGLL2Q8N8G2 317 aa25.44■■□□□ 1.66
VPS53-210ENST00000571456 SIL1Q9H173 461 aa25.44■■□□□ 1.66
VPS53-210ENST00000571456 GBA2Q9HCG7 927 aaPredicted RBP25.44■■□□□ 1.66
VPS53-210ENST00000571456 CNOT7Q9UIV1 285 aaKnown RBP25.44■■□□□ 1.66
VPS53-210ENST00000571456 HPS5Q9UPZ3 1129 aa25.44■■□□□ 1.66
VPS53-210ENST00000571456 PA2G4Q9UQ80 394 aaKnown RBP25.44■■□□□ 1.66
VPS53-210ENST00000571456 SURF6O75683 361 aaKnown RBP25.43■■□□□ 1.66
VPS53-210ENST00000571456 RAD17O75943 681 aa25.43■■□□□ 1.66
VPS53-210ENST00000571456 ZNF157P51786 506 aaPredicted RBP25.43■■□□□ 1.66
VPS53-210ENST00000571456 PUM3Q15397 648 aaKnown RBP25.43■■□□□ 1.66
VPS53-210ENST00000571456 DLK2Q6UY11 383 aa25.43■■□□□ 1.66
VPS53-210ENST00000571456 C2orf69Q8N8R5 385 aa25.43■■□□□ 1.66
VPS53-210ENST00000571456 AKAP2Q9Y2D5 859 aa25.43■■□□□ 1.66
VPS53-210ENST00000571456 H7C1D1 291 aa25.42■■□□□ 1.66
VPS53-210ENST00000571456 TAF5LO75529 589 aa25.41■■□□□ 1.66
VPS53-210ENST00000571456 OS9Q13438 667 aaPredicted RBP25.41■■□□□ 1.66
VPS53-210ENST00000571456 SHTN1A0MZ66 631 aa25.4■■□□□ 1.66
VPS53-210ENST00000571456 IFIT1P09914 478 aaKnown RBP25.4■■□□□ 1.66
VPS53-210ENST00000571456 KRT26Q7Z3Y9 468 aa25.4■■□□□ 1.66
VPS53-210ENST00000571456 SIRT2Q8IXJ6 389 aa25.4■■□□□ 1.66
VPS53-210ENST00000571456 HELBQ8NG08 1087 aaPredicted RBP25.4■■□□□ 1.66
VPS53-210ENST00000571456 LPIN2Q92539 896 aa25.4■■□□□ 1.66
VPS53-210ENST00000571456 CSRNP1Q96S65 589 aa25.4■■□□□ 1.66
VPS53-210ENST00000571456 GPR108Q9NPR9 543 aa25.4■■□□□ 1.66
VPS53-210ENST00000571456 G3V3G9 751 aa25.39■■□□□ 1.66
VPS53-210ENST00000571456 RAB11FIP3O75154 756 aa25.39■■□□□ 1.66
VPS53-210ENST00000571456 PKN2Q16513 984 aaKnown RBP25.39■■□□□ 1.66
VPS53-210ENST00000571456 DCAF8Q5TAQ9 597 aa25.39■■□□□ 1.66
VPS53-210ENST00000571456 PODNQ7Z5L7 613 aa25.39■■□□□ 1.66
VPS53-210ENST00000571456 MICALL2Q8IY33 904 aa25.39■■□□□ 1.66
VPS53-210ENST00000571456 COA1Q9GZY4 146 aa25.39■■□□□ 1.66
VPS53-210ENST00000571456 SLC5A1P13866 664 aa25.38■■□□□ 1.65
VPS53-210ENST00000571456 ZNF804AQ7Z570 1209 aa25.38■■□□□ 1.65
VPS53-210ENST00000571456 EXOC6Q8TAG9 804 aa25.38■■□□□ 1.65
VPS53-210ENST00000571456 SLC10A3P09131 477 aa25.37■■□□□ 1.65
VPS53-210ENST00000571456 FGFR2P21802 821 aa25.37■■□□□ 1.65
VPS53-210ENST00000571456 CAVIN4Q5BKX8 364 aa25.37■■□□□ 1.65
VPS53-210ENST00000571456 RIMBP2O15034 1052 aa25.36■■□□□ 1.65
VPS53-210ENST00000571456 HDAC1Q13547 482 aaPredicted RBP25.36■■□□□ 1.65
VPS53-210ENST00000571456 ATP2B3Q16720 1220 aa25.36■■□□□ 1.65
VPS53-210ENST00000571456 HABP4Q5JVS0 413 aaKnown RBP25.36■■□□□ 1.65
VPS53-210ENST00000571456 REM2Q8IYK8 340 aaPredicted RBP25.36■■□□□ 1.65
VPS53-210ENST00000571456 PCDHB15Q9Y5E8 787 aa25.36■■□□□ 1.65
VPS53-210ENST00000571456 IRS2Q9Y4H2 1338 aa25.36■■□□□ 1.65
VPS53-210ENST00000571456 ARAP2Q8WZ64 1704 aa25.35■■□□□ 1.65
VPS53-210ENST00000571456 ZBTB22O15209 634 aa25.35■■□□□ 1.65
VPS53-210ENST00000571456 SAMD7Q7Z3H4 446 aa25.35■■□□□ 1.65
VPS53-210ENST00000571456 KIF1BPQ96EK5 621 aa25.35■■□□□ 1.65
VPS53-210ENST00000571456 MKI67P46013 3256 aaKnown RBP25.35■■□□□ 1.65
VPS53-210ENST00000571456 PSME4Q14997 1843 aa25.35■■□□□ 1.65
VPS53-210ENST00000571456 SASH1O94885 1247 aa25.34■■□□□ 1.65
VPS53-210ENST00000571456 NEFLP07196 543 aa25.34■■□□□ 1.65
VPS53-210ENST00000571456 DPF2Q92785 391 aa25.34■■□□□ 1.65
VPS53-210ENST00000571456 DCTPP1Q9H773 170 aa25.34■■□□□ 1.65
VPS53-210ENST00000571456 YDJCA8MPS7 323 aa25.33■■□□□ 1.65
VPS53-210ENST00000571456 ECE2O60344 883 aa25.33■■□□□ 1.65
VPS53-210ENST00000571456 TFCP2Q12800 502 aa25.33■■□□□ 1.65
VPS53-210ENST00000571456 DCPSQ96C86 337 aaKnown RBP25.33■■□□□ 1.65
VPS53-210ENST00000571456 RWDD1Q9H446 243 aaPredicted RBP25.33■■□□□ 1.65
VPS53-210ENST00000571456 HDAC9Q9UKV0 1011 aa25.33■■□□□ 1.65
VPS53-210ENST00000571456 ADM5C9JUS6 153 aa25.32■■□□□ 1.64
VPS53-210ENST00000571456 HIBADHP31937 336 aaKnown RBP25.32■■□□□ 1.64
VPS53-210ENST00000571456 TBC1D10BQ4KMP7 808 aaPredicted RBP25.32■■□□□ 1.64
VPS53-210ENST00000571456 VPS37DQ86XT2 251 aa25.32■■□□□ 1.64
VPS53-210ENST00000571456 EXOC6BQ9Y2D4 811 aa25.32■■□□□ 1.64
VPS53-210ENST00000571456 ZBTB12Q9Y330 459 aaPredicted RBP25.32■■□□□ 1.64
VPS53-210ENST00000571456 IL1R1P14778 569 aa25.31■■□□□ 1.64
VPS53-210ENST00000571456 DBNDD1Q9H9R9 158 aa25.31■■□□□ 1.64
VPS53-210ENST00000571456 CD209Q9NNX6 404 aa25.31■■□□□ 1.64
VPS53-210ENST00000571456 ZNF609O15014 1411 aa25.3■■□□□ 1.64
VPS53-210ENST00000571456 A0A1B0GUL7 405 aa25.3■■□□□ 1.64
VPS53-210ENST00000571456 FBXO33Q7Z6M2 555 aa25.3■■□□□ 1.64
VPS53-210ENST00000571456 RHPN1Q8TCX5 695 aa25.3■■□□□ 1.64
VPS53-210ENST00000571456 FAM84BQ96KN1 310 aaPredicted RBP25.3■■□□□ 1.64
VPS53-210ENST00000571456 GNL3LQ9NVN8 582 aaKnown RBP25.3■■□□□ 1.64
VPS53-210ENST00000571456 EGFRP00533 1210 aa25.29■■□□□ 1.64
VPS53-210ENST00000571456 DOK7Q18PE1 504 aa25.29■■□□□ 1.64
VPS53-210ENST00000571456 TNNI3KQ59H18 835 aa25.29■■□□□ 1.64
VPS53-210ENST00000571456 TXNRD3Q86VQ6 643 aa25.29■■□□□ 1.64
VPS53-210ENST00000571456 CLASRPQ8N2M8 674 aaKnown RBP25.29■■□□□ 1.64
VPS53-210ENST00000571456 FPGT-TNNI3KV9GXZ4 949 aa25.29■■□□□ 1.64
VPS53-210ENST00000571456 WTIPA6NIX2 430 aaPredicted RBP25.28■■□□□ 1.64
VPS53-210ENST00000571456 SNAP23O00161 211 aa25.28■■□□□ 1.64
VPS53-210ENST00000571456 SEMA3EO15041 775 aa25.28■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms