RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 ARMC9Q7Z3E5 817 aa18.92■□□□□ 0.62
CLN3-236ENST00000568558 MTMR14Q8NCE2 650 aa18.92■□□□□ 0.62
CLN3-236ENST00000568558 C9orf78Q9NZ63 289 aaPredicted RBP18.92■□□□□ 0.62
CLN3-236ENST00000568558 FKBP1AP62942 108 aaKnown RBP18.91■□□□□ 0.62
CLN3-236ENST00000568558 PRKG1Q13976 671 aa18.91■□□□□ 0.62
CLN3-236ENST00000568558 TAF7LQ5H9L4 462 aa18.91■□□□□ 0.62
CLN3-236ENST00000568558 SLC4A10Q6U841 1118 aa18.91■□□□□ 0.62
CLN3-236ENST00000568558 SRCIN1Q9C0H9 1055 aa18.91■□□□□ 0.62
CLN3-236ENST00000568558 CNNM1Q9NRU3 951 aa18.91■□□□□ 0.62
CLN3-236ENST00000568558 SSC5DA1L4H1 1573 aa18.9■□□□□ 0.62
CLN3-236ENST00000568558 TM4SF4P48230 202 aa18.9■□□□□ 0.62
CLN3-236ENST00000568558 PTPN12Q05209 780 aaKnown RBP18.9■□□□□ 0.62
CLN3-236ENST00000568558 CTU1Q7Z7A3 348 aaKnown RBP18.9■□□□□ 0.62
CLN3-236ENST00000568558 DEFB129Q9H1M3 183 aa18.9■□□□□ 0.62
CLN3-236ENST00000568558 PCDHAC2Q9Y5I4 1007 aa18.9■□□□□ 0.62
CLN3-236ENST00000568558 OTOFQ9HC10 1997 aa18.9■□□□□ 0.62
CLN3-236ENST00000568558 F8W031 263 aaPredicted RBP18.89■□□□□ 0.61
CLN3-236ENST00000568558 PLIN1O60240 522 aa18.89■□□□□ 0.61
CLN3-236ENST00000568558 MKRN3Q13064 507 aaKnown RBP18.89■□□□□ 0.61
CLN3-236ENST00000568558 CFAP100Q494V2 611 aa18.89■□□□□ 0.61
CLN3-236ENST00000568558 LDLRAD1Q5T700 205 aa18.89■□□□□ 0.61
CLN3-236ENST00000568558 ZNF521Q96K83 1311 aa18.89■□□□□ 0.61
CLN3-236ENST00000568558 TNRC18O15417 2968 aaPredicted RBP18.89■□□□□ 0.61
CLN3-236ENST00000568558 SPDYE2BA6NHP3 402 aa18.88■□□□□ 0.61
CLN3-236ENST00000568558 TBC1D8O95759 1140 aa18.88■□□□□ 0.61
CLN3-236ENST00000568558 SPDYE6P0CI01 402 aa18.88■□□□□ 0.61
CLN3-236ENST00000568558 KAZALD1Q96I82 304 aa18.88■□□□□ 0.61
CLN3-236ENST00000568558 SUCLG2Q96I99 432 aa18.88■□□□□ 0.61
CLN3-236ENST00000568558 ANGEL1Q9UNK9 670 aaKnown RBP18.88■□□□□ 0.61
CLN3-236ENST00000568558 FZD1Q9UP38 647 aa18.88■□□□□ 0.61
CLN3-236ENST00000568558 JAG2Q9Y219 1238 aa18.88■□□□□ 0.61
CLN3-236ENST00000568558 SREBF2Q12772 1141 aa18.87■□□□□ 0.61
CLN3-236ENST00000568558 FAM205AQ6ZU69 1335 aa18.87■□□□□ 0.61
CLN3-236ENST00000568558 PRMT6Q96LA8 375 aaPredicted RBP18.87■□□□□ 0.61
CLN3-236ENST00000568558 MYH13Q9UKX3 1938 aa18.87■□□□□ 0.61
CLN3-236ENST00000568558 PPP2R3BQ9Y5P8 575 aa18.87■□□□□ 0.61
CLN3-236ENST00000568558 UTYO14607 1347 aa18.86■□□□□ 0.61
CLN3-236ENST00000568558 AOX1Q06278 1338 aa18.86■□□□□ 0.61
CLN3-236ENST00000568558 CLRN2A0PK11 232 aa18.86■□□□□ 0.61
CLN3-236ENST00000568558 MYO1BO43795 1136 aa18.86■□□□□ 0.61
CLN3-236ENST00000568558 NBPF7P0C2Y1 421 aaPredicted RBP18.86■□□□□ 0.61
CLN3-236ENST00000568558 UBE4AQ14139 1066 aa18.86■□□□□ 0.61
CLN3-236ENST00000568558 MAP3K11Q16584 847 aa18.86■□□□□ 0.61
CLN3-236ENST00000568558 ZNF296Q8WUU4 475 aaPredicted RBP18.86■□□□□ 0.61
CLN3-236ENST00000568558 NOM1Q5C9Z4 860 aaKnown RBP18.85■□□□□ 0.61
CLN3-236ENST00000568558 SPRYD7Q5W111 196 aa18.85■□□□□ 0.61
CLN3-236ENST00000568558 TDRD7Q8NHU6 1098 aaKnown RBP18.85■□□□□ 0.61
CLN3-236ENST00000568558 PUS3Q9BZE2 481 aaKnown RBP18.85■□□□□ 0.61
CLN3-236ENST00000568558 GPR25O00155 361 aa18.84■□□□□ 0.61
CLN3-236ENST00000568558 GYG1P46976 350 aa18.84■□□□□ 0.61
CLN3-236ENST00000568558 MRPL50Q8N5N7 158 aaKnown RBP18.84■□□□□ 0.61
CLN3-236ENST00000568558 CFHR5Q9BXR6 569 aa18.84■□□□□ 0.61
CLN3-236ENST00000568558 VEZTQ9HBM0 779 aa18.84■□□□□ 0.61
CLN3-236ENST00000568558 PDE4DIPQ5VU43 2346 aa18.83■□□□□ 0.61
CLN3-236ENST00000568558 PPP1R12BO60237 982 aaPredicted RBP18.83■□□□□ 0.6
CLN3-236ENST00000568558 HIBADHP31937 336 aaKnown RBP18.83■□□□□ 0.6
CLN3-236ENST00000568558 RBM5P52756 815 aaKnown RBP eCLIP18.83■□□□□ 0.6
CLN3-236ENST00000568558 SOX10P56693 466 aa18.83■□□□□ 0.6
CLN3-236ENST00000568558 RABL6Q3YEC7 729 aaPredicted RBP18.83■□□□□ 0.6
CLN3-236ENST00000568558 SUPT20HL1Q3ZLR7 823 aa18.83■□□□□ 0.6
CLN3-236ENST00000568558 MFSD14BQ5SR56 506 aa18.83■□□□□ 0.6
CLN3-236ENST00000568558 FAM84BQ96KN1 310 aaPredicted RBP18.83■□□□□ 0.6
CLN3-236ENST00000568558 BICC1Q9H694 974 aaKnown RBP18.83■□□□□ 0.6
CLN3-236ENST00000568558 RIPOR2Q9Y4F9 1068 aa18.83■□□□□ 0.6
CLN3-236ENST00000568558 MROH5Q6ZUA9 1318 aa18.82■□□□□ 0.6
CLN3-236ENST00000568558 PKN2Q16513 984 aaKnown RBP18.82■□□□□ 0.6
CLN3-236ENST00000568558 NBPF12Q5TAG4 269 aaPredicted RBP18.82■□□□□ 0.6
CLN3-236ENST00000568558 SLC10A4Q96EP9 437 aa18.82■□□□□ 0.6
CLN3-236ENST00000568558 CLMNQ96JQ2 1002 aa18.82■□□□□ 0.6
CLN3-236ENST00000568558 HPS5Q9UPZ3 1129 aa18.82■□□□□ 0.6
CLN3-236ENST00000568558 PTPRCP08575 1304 aa18.81■□□□□ 0.6
CLN3-236ENST00000568558 MANSC4A6NHS7 340 aaPredicted RBP18.81■□□□□ 0.6
CLN3-236ENST00000568558 UNCXA6NJT0 531 aa18.81■□□□□ 0.6
CLN3-236ENST00000568558 ZBTB48P10074 688 aaPredicted RBP18.81■□□□□ 0.6
CLN3-236ENST00000568558 RASA3Q14644 834 aa18.81■□□□□ 0.6
CLN3-236ENST00000568558 SPDYE2Q495Y8 402 aa18.81■□□□□ 0.6
CLN3-236ENST00000568558 ANKRD44Q8N8A2 993 aa18.81■□□□□ 0.6
CLN3-236ENST00000568558 WNK4Q96J92 1243 aa18.81■□□□□ 0.6
CLN3-236ENST00000568558 R3HDMLQ9H3Y0 253 aa18.81■□□□□ 0.6
CLN3-236ENST00000568558 SERPINA10Q9UK55 444 aa18.81■□□□□ 0.6
CLN3-236ENST00000568558 TTF2Q9UNY4 1162 aaKnown RBP18.81■□□□□ 0.6
CLN3-236ENST00000568558 ALDH1A1P00352 501 aa18.8■□□□□ 0.6
CLN3-236ENST00000568558 INHBEP58166 350 aa18.8■□□□□ 0.6
CLN3-236ENST00000568558 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.8■□□□□ 0.6
CLN3-236ENST00000568558 FKTNO75072 461 aa18.79■□□□□ 0.6
CLN3-236ENST00000568558 USP2O75604 605 aaPredicted RBP18.79■□□□□ 0.6
CLN3-236ENST00000568558 TNFAIP1Q13829 316 aa18.79■□□□□ 0.6
CLN3-236ENST00000568558 LRRC24Q50LG9 513 aa18.79■□□□□ 0.6
CLN3-236ENST00000568558 ZNF70Q9UC06 446 aaPredicted RBP18.79■□□□□ 0.6
CLN3-236ENST00000568558 E9PSI1 815 aa18.78■□□□□ 0.6
CLN3-236ENST00000568558 IREB2P48200 963 aaKnown RBP18.78■□□□□ 0.6
CLN3-236ENST00000568558 METTL24Q5JXM2 366 aa18.78■□□□□ 0.6
CLN3-236ENST00000568558 FBXO33Q7Z6M2 555 aa18.78■□□□□ 0.6
CLN3-236ENST00000568558 IFNL1Q8IU54 200 aa18.78■□□□□ 0.6
CLN3-236ENST00000568558 VGLL2Q8N8G2 317 aa18.78■□□□□ 0.6
CLN3-236ENST00000568558 SSH1Q8WYL5 1049 aa18.78■□□□□ 0.6
CLN3-236ENST00000568558 TDRD3Q9H7E2 651 aaKnown RBP18.78■□□□□ 0.6
CLN3-236ENST00000568558 IGF2BP3O00425 579 aaKnown RBP eCLIP18.77■□□□□ 0.6
CLN3-236ENST00000568558 PDE8BO95263 885 aa18.77■□□□□ 0.6
CLN3-236ENST00000568558 GRIK5Q16478 980 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms