RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	MOB2	Q70IA6	237 aa		21.31	■■□□□ 1
CLN3-231	ENST00000568422	ARMC9	Q7Z3E5	817 aa		21.31	■■□□□ 1
CLN3-231	ENST00000568422	ZNF521	Q96K83	1311 aa		21.3	■■□□□ 1
CLN3-231	ENST00000568422	SNAP23	O00161	211 aa		21.3	■■□□□ 1
CLN3-231	ENST00000568422	MYO1B	O43795	1136 aa		21.29	■■□□□ 1
CLN3-231	ENST00000568422	CERS5	Q8N5B7	392 aa		21.29	■■□□□ 1
CLN3-231	ENST00000568422	PPP2R3B	Q9Y5P8	575 aa		21.29	■■□□□ 1
CLN3-231	ENST00000568422	UBE4A	Q14139	1066 aa		21.28	■■□□□ 1
CLN3-231	ENST00000568422	ZNF594	Q96JF6	807 aa	Predicted RBP	21.28	■■□□□ 1
CLN3-231	ENST00000568422	UTY	O14607	1347 aa		21.28	■■□□□ 1
CLN3-231	ENST00000568422	PLIN1	O60240	522 aa		21.27	■■□□□ 1
CLN3-231	ENST00000568422	TM4SF4	P48230	202 aa		21.27	■■□□□ 1
CLN3-231	ENST00000568422	MLLT1	Q03111	559 aa	Predicted RBP	21.27	■■□□□ 1
CLN3-231	ENST00000568422	DEFB129	Q9H1M3	183 aa		21.27	■■□□□ 1
CLN3-231	ENST00000568422	LDLRAD1	Q5T700	205 aa		21.26	■□□□□ 0.99
CLN3-231	ENST00000568422	FAM205A	Q6ZU69	1335 aa		21.26	■□□□□ 0.99
CLN3-231	ENST00000568422	SPDYE2B	A6NHP3	402 aa		21.25	■□□□□ 0.99
CLN3-231	ENST00000568422	SPDYE6	P0CI01	402 aa		21.25	■□□□□ 0.99
CLN3-231	ENST00000568422	PTPN12	Q05209	780 aa	Known RBP	21.25	■□□□□ 0.99
CLN3-231	ENST00000568422	SREBF2	Q12772	1141 aa		21.25	■□□□□ 0.99
CLN3-231	ENST00000568422	CFAP100	Q494V2	611 aa		21.25	■□□□□ 0.99
CLN3-231	ENST00000568422	SUCLG2	Q96I99	432 aa		21.25	■□□□□ 0.99
CLN3-231	ENST00000568422	PTPRC	P08575	1304 aa		21.25	■□□□□ 0.99
CLN3-231	ENST00000568422	MROH5	Q6ZUA9	1318 aa		21.25	■□□□□ 0.99
CLN3-231	ENST00000568422	UNCX	A6NJT0	531 aa		21.24	■□□□□ 0.99
CLN3-231	ENST00000568422		E9PSI1	815 aa		21.24	■□□□□ 0.99
CLN3-231	ENST00000568422	PPP1R12B	O60237	982 aa	Predicted RBP	21.24	■□□□□ 0.99
CLN3-231	ENST00000568422	NBPF7	P0C2Y1	421 aa	Predicted RBP	21.24	■□□□□ 0.99
CLN3-231	ENST00000568422	HIBADH	P31937	336 aa	Known RBP	21.24	■□□□□ 0.99
CLN3-231	ENST00000568422	NOM1	Q5C9Z4	860 aa	Known RBP	21.24	■□□□□ 0.99
CLN3-231	ENST00000568422	TDRD7	Q8NHU6	1098 aa	Known RBP	21.24	■□□□□ 0.99
CLN3-231	ENST00000568422	KAZALD1	Q96I82	304 aa		21.24	■□□□□ 0.99
CLN3-231	ENST00000568422	ANGEL1	Q9UNK9	670 aa	Known RBP	21.24	■□□□□ 0.99
CLN3-231	ENST00000568422	ARAP2	Q8WZ64	1704 aa		21.24	■□□□□ 0.99
CLN3-231	ENST00000568422		F8W031	263 aa	Predicted RBP	21.23	■□□□□ 0.99
CLN3-231	ENST00000568422	PRKG1	Q13976	671 aa		21.23	■□□□□ 0.99
CLN3-231	ENST00000568422	MAP3K11	Q16584	847 aa		21.23	■□□□□ 0.99
CLN3-231	ENST00000568422	SUPT20HL1	Q3ZLR7	823 aa		21.23	■□□□□ 0.99
CLN3-231	ENST00000568422	CTU1	Q7Z7A3	348 aa	Known RBP	21.23	■□□□□ 0.99
CLN3-231	ENST00000568422	MRPL50	Q8N5N7	158 aa	Known RBP	21.23	■□□□□ 0.99
CLN3-231	ENST00000568422	PRMT6	Q96LA8	375 aa	Predicted RBP	21.23	■□□□□ 0.99
CLN3-231	ENST00000568422	RIPOR2	Q9Y4F9	1068 aa		21.23	■□□□□ 0.99
CLN3-231	ENST00000568422	LAMB1	P07942	1786 aa		21.23	■□□□□ 0.99
CLN3-231	ENST00000568422	RABL6	Q3YEC7	729 aa	Predicted RBP	21.22	■□□□□ 0.99
CLN3-231	ENST00000568422	RBM5	P52756	815 aa	Known RBP eCLIP	21.21	■□□□□ 0.99
CLN3-231	ENST00000568422	INHBE	P58166	350 aa		21.21	■□□□□ 0.99
CLN3-231	ENST00000568422	PKN2	Q16513	984 aa	Known RBP	21.21	■□□□□ 0.99
CLN3-231	ENST00000568422	MFSD14B	Q5SR56	506 aa		21.21	■□□□□ 0.99
CLN3-231	ENST00000568422	SPRYD7	Q5W111	196 aa		21.21	■□□□□ 0.99
CLN3-231	ENST00000568422	FAM84B	Q96KN1	310 aa	Predicted RBP	21.21	■□□□□ 0.99
CLN3-231	ENST00000568422	CFHR5	Q9BXR6	569 aa		21.21	■□□□□ 0.99
CLN3-231	ENST00000568422	ALDH1A1	P00352	501 aa		21.2	■□□□□ 0.98
CLN3-231	ENST00000568422	GYG1	P46976	350 aa		21.2	■□□□□ 0.98
CLN3-231	ENST00000568422	SLC10A4	Q96EP9	437 aa		21.2	■□□□□ 0.98
CLN3-231	ENST00000568422	PUS3	Q9BZE2	481 aa	Known RBP	21.2	■□□□□ 0.98
CLN3-231	ENST00000568422	BICC1	Q9H694	974 aa	Known RBP	21.2	■□□□□ 0.98
CLN3-231	ENST00000568422	SERPINA10	Q9UK55	444 aa		21.2	■□□□□ 0.98
CLN3-231	ENST00000568422	CLRN2	A0PK11	232 aa		21.19	■□□□□ 0.98
CLN3-231	ENST00000568422	TBC1D8	O95759	1140 aa		21.19	■□□□□ 0.98
CLN3-231	ENST00000568422	ZBTB48	P10074	688 aa	Predicted RBP	21.19	■□□□□ 0.98
CLN3-231	ENST00000568422	MKRN3	Q13064	507 aa	Known RBP	21.19	■□□□□ 0.98
CLN3-231	ENST00000568422	TNFAIP1	Q13829	316 aa		21.19	■□□□□ 0.98
CLN3-231	ENST00000568422	VPS37D	Q86XT2	251 aa		21.19	■□□□□ 0.98
CLN3-231	ENST00000568422	ZNF296	Q8WUU4	475 aa	Predicted RBP	21.19	■□□□□ 0.98
CLN3-231	ENST00000568422	VEZT	Q9HBM0	779 aa		21.19	■□□□□ 0.98
CLN3-231	ENST00000568422	JAG2	Q9Y219	1238 aa		21.19	■□□□□ 0.98
CLN3-231	ENST00000568422	PCDHAC2	Q9Y5I4	1007 aa		21.19	■□□□□ 0.98
CLN3-231	ENST00000568422	MANSC4	A6NHS7	340 aa	Predicted RBP	21.18	■□□□□ 0.98
CLN3-231	ENST00000568422	CAVIN4	Q5BKX8	364 aa		21.18	■□□□□ 0.98
CLN3-231	ENST00000568422	TTF2	Q9UNY4	1162 aa	Known RBP	21.18	■□□□□ 0.98
CLN3-231	ENST00000568422	SSC5D	A1L4H1	1573 aa		21.18	■□□□□ 0.98
CLN3-231	ENST00000568422	IREB2	P48200	963 aa	Known RBP	21.17	■□□□□ 0.98
CLN3-231	ENST00000568422	SLFN5	Q08AF3	891 aa		21.17	■□□□□ 0.98
CLN3-231	ENST00000568422	ALDH1L2	Q3SY69	923 aa		21.17	■□□□□ 0.98
CLN3-231	ENST00000568422	SPDYE2	Q495Y8	402 aa		21.17	■□□□□ 0.98
CLN3-231	ENST00000568422	METTL24	Q5JXM2	366 aa		21.17	■□□□□ 0.98
CLN3-231	ENST00000568422	ANKRD44	Q8N8A2	993 aa		21.17	■□□□□ 0.98
CLN3-231	ENST00000568422	SSH1	Q8WYL5	1049 aa		21.17	■□□□□ 0.98
CLN3-231	ENST00000568422	GPR25	O00155	361 aa		21.16	■□□□□ 0.98
CLN3-231	ENST00000568422	PDE8B	O95263	885 aa		21.16	■□□□□ 0.98
CLN3-231	ENST00000568422	RASA3	Q14644	834 aa		21.16	■□□□□ 0.98
CLN3-231	ENST00000568422	FBXO33	Q7Z6M2	555 aa		21.16	■□□□□ 0.98
CLN3-231	ENST00000568422	TBC1D22A	Q8WUA7	517 aa		21.16	■□□□□ 0.98
CLN3-231	ENST00000568422	USP44	Q9H0E7	712 aa		21.16	■□□□□ 0.98
CLN3-231	ENST00000568422	NBPF12	Q5TAG4	269 aa	Predicted RBP	21.15	■□□□□ 0.98
CLN3-231	ENST00000568422	WNK4	Q96J92	1243 aa		21.15	■□□□□ 0.98
CLN3-231	ENST00000568422	ZNF70	Q9UC06	446 aa	Predicted RBP	21.15	■□□□□ 0.98
CLN3-231	ENST00000568422	FZD1	Q9UP38	647 aa		21.15	■□□□□ 0.98
CLN3-231	ENST00000568422	KIF16B	Q96L93	1317 aa		21.14	■□□□□ 0.97
CLN3-231	ENST00000568422	FRAT2	O75474	233 aa	Predicted RBP	21.14	■□□□□ 0.97
CLN3-231	ENST00000568422	HDLBP	Q00341	1268 aa	Known RBP	21.14	■□□□□ 0.97
CLN3-231	ENST00000568422	LRRC24	Q50LG9	513 aa		21.14	■□□□□ 0.97
CLN3-231	ENST00000568422	DZIP1L	Q8IYY4	767 aa	Known RBP	21.14	■□□□□ 0.97
CLN3-231	ENST00000568422	ANKRD13A	Q8IZ07	590 aa		21.14	■□□□□ 0.97
CLN3-231	ENST00000568422	VGLL2	Q8N8G2	317 aa		21.14	■□□□□ 0.97
CLN3-231	ENST00000568422	TNRC18	O15417	2968 aa	Predicted RBP	21.13	■□□□□ 0.97
CLN3-231	ENST00000568422	AOX1	Q06278	1338 aa		21.13	■□□□□ 0.97
CLN3-231	ENST00000568422	FKTN	O75072	461 aa		21.13	■□□□□ 0.97
CLN3-231	ENST00000568422	USP2	O75604	605 aa	Predicted RBP	21.13	■□□□□ 0.97
CLN3-231	ENST00000568422	CRK	P46108	304 aa		21.13	■□□□□ 0.97

Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms