RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CNNM1Q9NRU3 951 aa21.66■■□□□ 1.06
CLN3-216ENST00000565316 DLGAP5Q15398 846 aa21.65■■□□□ 1.06
CLN3-216ENST00000565316 TAF7LQ5H9L4 462 aa21.65■■□□□ 1.06
CLN3-216ENST00000565316 MRPL50Q8N5N7 158 aaKnown RBP21.65■■□□□ 1.06
CLN3-216ENST00000565316 SUCLG2Q96I99 432 aa21.65■■□□□ 1.06
CLN3-216ENST00000565316 COL1A1P02452 1464 aaPredicted RBP21.64■■□□□ 1.06
CLN3-216ENST00000565316 TTLL12Q14166 644 aaPredicted RBP21.64■■□□□ 1.05
CLN3-216ENST00000565316 AKAP11Q9UKA4 1901 aa21.64■■□□□ 1.05
CLN3-216ENST00000565316 PLIN1O60240 522 aa21.63■■□□□ 1.05
CLN3-216ENST00000565316 NBPF7P0C2Y1 421 aaPredicted RBP21.63■■□□□ 1.05
CLN3-216ENST00000565316 UBE4AQ14139 1066 aa21.63■■□□□ 1.05
CLN3-216ENST00000565316 LDLRAD1Q5T700 205 aa21.63■■□□□ 1.05
CLN3-216ENST00000565316 DEFB129Q9H1M3 183 aa21.63■■□□□ 1.05
CLN3-216ENST00000565316 FAM205AQ6ZU69 1335 aa21.63■■□□□ 1.05
CLN3-216ENST00000565316 TM4SF4P48230 202 aa21.62■■□□□ 1.05
CLN3-216ENST00000565316 PTPN12Q05209 780 aaKnown RBP21.62■■□□□ 1.05
CLN3-216ENST00000565316 RABL6Q3YEC7 729 aaPredicted RBP21.62■■□□□ 1.05
CLN3-216ENST00000565316 ARMC9Q7Z3E5 817 aa21.62■■□□□ 1.05
CLN3-216ENST00000565316 RIPOR2Q9Y4F9 1068 aa21.62■■□□□ 1.05
CLN3-216ENST00000565316 SPDYE2BA6NHP3 402 aa21.61■■□□□ 1.05
CLN3-216ENST00000565316 SPDYE6P0CI01 402 aa21.61■■□□□ 1.05
CLN3-216ENST00000565316 CFAP100Q494V2 611 aa21.61■■□□□ 1.05
CLN3-216ENST00000565316 TDRD7Q8NHU6 1098 aaKnown RBP21.61■■□□□ 1.05
CLN3-216ENST00000565316 PUS3Q9BZE2 481 aaKnown RBP21.61■■□□□ 1.05
CLN3-216ENST00000565316 PCDHAC2Q9Y5I4 1007 aa21.61■■□□□ 1.05
CLN3-216ENST00000565316 PPP2R3BQ9Y5P8 575 aa21.61■■□□□ 1.05
CLN3-216ENST00000565316 E9PSI1 815 aa21.6■■□□□ 1.05
CLN3-216ENST00000565316 FAM84BQ96KN1 310 aaPredicted RBP21.6■■□□□ 1.05
CLN3-216ENST00000565316 PRMT6Q96LA8 375 aaPredicted RBP21.6■■□□□ 1.05
CLN3-216ENST00000565316 PTPRCP08575 1304 aa21.6■■□□□ 1.05
CLN3-216ENST00000565316 F8W031 263 aaPredicted RBP21.59■■□□□ 1.05
CLN3-216ENST00000565316 MAP3K11Q16584 847 aa21.59■■□□□ 1.05
CLN3-216ENST00000565316 MROH5Q6ZUA9 1318 aa21.59■■□□□ 1.05
CLN3-216ENST00000565316 ANKRD44Q8N8A2 993 aa21.59■■□□□ 1.05
CLN3-216ENST00000565316 BICC1Q9H694 974 aaKnown RBP21.59■■□□□ 1.05
CLN3-216ENST00000565316 JAG2Q9Y219 1238 aa21.59■■□□□ 1.05
CLN3-216ENST00000565316 HIBADHP31937 336 aaKnown RBP21.58■■□□□ 1.05
CLN3-216ENST00000565316 SSH1Q8WYL5 1049 aa21.58■■□□□ 1.05
CLN3-216ENST00000565316 AOX1Q06278 1338 aa21.57■■□□□ 1.04
CLN3-216ENST00000565316 MYO1BO43795 1136 aa21.57■■□□□ 1.04
CLN3-216ENST00000565316 GYG1P46976 350 aa21.57■■□□□ 1.04
CLN3-216ENST00000565316 SLFN5Q08AF3 891 aa21.57■■□□□ 1.04
CLN3-216ENST00000565316 PRKG1Q13976 671 aa21.57■■□□□ 1.04
CLN3-216ENST00000565316 CTU1Q7Z7A3 348 aaKnown RBP21.57■■□□□ 1.04
CLN3-216ENST00000565316 ANGEL1Q9UNK9 670 aaKnown RBP21.57■■□□□ 1.04
CLN3-216ENST00000565316 SSC5DA1L4H1 1573 aa21.57■■□□□ 1.04
CLN3-216ENST00000565316 UNCXA6NJT0 531 aa21.56■■□□□ 1.04
CLN3-216ENST00000565316 MLLT1Q03111 559 aaPredicted RBP21.56■■□□□ 1.04
CLN3-216ENST00000565316 NOM1Q5C9Z4 860 aaKnown RBP21.56■■□□□ 1.04
CLN3-216ENST00000565316 MFSD14BQ5SR56 506 aa21.56■■□□□ 1.04
CLN3-216ENST00000565316 SPRYD7Q5W111 196 aa21.56■■□□□ 1.04
CLN3-216ENST00000565316 FBXO33Q7Z6M2 555 aa21.56■■□□□ 1.04
CLN3-216ENST00000565316 CFHR5Q9BXR6 569 aa21.56■■□□□ 1.04
CLN3-216ENST00000565316 SERPINA10Q9UK55 444 aa21.56■■□□□ 1.04
CLN3-216ENST00000565316 CLRN2A0PK11 232 aa21.55■■□□□ 1.04
CLN3-216ENST00000565316 SREBF2Q12772 1141 aa21.55■■□□□ 1.04
CLN3-216ENST00000565316 USP44Q9H0E7 712 aa21.55■■□□□ 1.04
CLN3-216ENST00000565316 ECM29Q5VYK3 1845 aa21.55■■□□□ 1.04
CLN3-216ENST00000565316 TBC1D8O95759 1140 aa21.55■■□□□ 1.04
CLN3-216ENST00000565316 MKRN3Q13064 507 aaKnown RBP21.55■■□□□ 1.04
CLN3-216ENST00000565316 SUPT20HL1Q3ZLR7 823 aa21.55■■□□□ 1.04
CLN3-216ENST00000565316 LRRC24Q50LG9 513 aa21.55■■□□□ 1.04
CLN3-216ENST00000565316 VGLL2Q8N8G2 317 aa21.55■■□□□ 1.04
CLN3-216ENST00000565316 FZD1Q9UP38 647 aa21.55■■□□□ 1.04
CLN3-216ENST00000565316 PPP1R12BO60237 982 aaPredicted RBP21.54■■□□□ 1.04
CLN3-216ENST00000565316 ALDH1L2Q3SY69 923 aa21.54■■□□□ 1.04
CLN3-216ENST00000565316 ZNF296Q8WUU4 475 aaPredicted RBP21.54■■□□□ 1.04
CLN3-216ENST00000565316 VEZTQ9HBM0 779 aa21.54■■□□□ 1.04
CLN3-216ENST00000565316 TTF2Q9UNY4 1162 aaKnown RBP21.54■■□□□ 1.04
CLN3-216ENST00000565316 RBM5P52756 815 aaKnown RBP eCLIP21.53■■□□□ 1.04
CLN3-216ENST00000565316 RASA3Q14644 834 aa21.53■■□□□ 1.04
CLN3-216ENST00000565316 SPDYE2Q495Y8 402 aa21.53■■□□□ 1.04
CLN3-216ENST00000565316 NBPF12Q5TAG4 269 aaPredicted RBP21.53■■□□□ 1.04
CLN3-216ENST00000565316 TRMT2AQ8IZ69 625 aaKnown RBP21.53■■□□□ 1.04
CLN3-216ENST00000565316 SLC10A4Q96EP9 437 aa21.53■■□□□ 1.04
CLN3-216ENST00000565316 GPR25O00155 361 aa21.52■■□□□ 1.03
CLN3-216ENST00000565316 PDE8BO95263 885 aa21.52■■□□□ 1.03
CLN3-216ENST00000565316 ZBTB48P10074 688 aaPredicted RBP21.52■■□□□ 1.03
CLN3-216ENST00000565316 METTL24Q5JXM2 366 aa21.52■■□□□ 1.03
CLN3-216ENST00000565316 ZNF70Q9UC06 446 aaPredicted RBP21.52■■□□□ 1.03
CLN3-216ENST00000565316 MANSC4A6NHS7 340 aaPredicted RBP21.51■■□□□ 1.03
CLN3-216ENST00000565316 INHBEP58166 350 aa21.51■■□□□ 1.03
CLN3-216ENST00000565316 PKN2Q16513 984 aaKnown RBP21.51■■□□□ 1.03
CLN3-216ENST00000565316 DZIP1LQ8IYY4 767 aaKnown RBP21.51■■□□□ 1.03
CLN3-216ENST00000565316 CLMNQ96JQ2 1002 aa21.51■■□□□ 1.03
CLN3-216ENST00000565316 USP2O75604 605 aaPredicted RBP21.5■■□□□ 1.03
CLN3-216ENST00000565316 TNFAIP1Q13829 316 aa21.5■■□□□ 1.03
CLN3-216ENST00000565316 VPS37DQ86XT2 251 aa21.5■■□□□ 1.03
CLN3-216ENST00000565316 CDCA7LQ96GN5 454 aa21.5■■□□□ 1.03
CLN3-216ENST00000565316 WNK4Q96J92 1243 aa21.5■■□□□ 1.03
CLN3-216ENST00000565316 R3HDMLQ9H3Y0 253 aa21.5■■□□□ 1.03
CLN3-216ENST00000565316 TNRC18O15417 2968 aaPredicted RBP21.49■■□□□ 1.03
CLN3-216ENST00000565316 KIF16BQ96L93 1317 aa21.49■■□□□ 1.03
CLN3-216ENST00000565316 ALDH1A1P00352 501 aa21.49■■□□□ 1.03
CLN3-216ENST00000565316 CRKP46108 304 aa21.49■■□□□ 1.03
CLN3-216ENST00000565316 IREB2P48200 963 aaKnown RBP21.49■■□□□ 1.03
CLN3-216ENST00000565316 RFX5P48382 616 aaPredicted RBP21.49■■□□□ 1.03
CLN3-216ENST00000565316 HDLBPQ00341 1268 aaKnown RBP21.49■■□□□ 1.03
CLN3-216ENST00000565316 GRIK5Q16478 980 aa21.49■■□□□ 1.03
CLN3-216ENST00000565316 CAVIN4Q5BKX8 364 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms