RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 HIBADHP31937 336 aaKnown RBP17.04■□□□□ 0.32
VPS9D1-204ENST00000565023 HUNKP57058 714 aa17.04■□□□□ 0.32
VPS9D1-204ENST00000565023 PRAMEF18Q5VWM3 479 aa17.04■□□□□ 0.32
VPS9D1-204ENST00000565023 VPS37DQ86XT2 251 aa17.04■□□□□ 0.32
VPS9D1-204ENST00000565023 CDCA5Q96FF9 252 aa17.04■□□□□ 0.32
VPS9D1-204ENST00000565023 WNT10BO00744 389 aa17.03■□□□□ 0.32
VPS9D1-204ENST00000565023 FOXN1O15353 648 aa17.03■□□□□ 0.32
VPS9D1-204ENST00000565023 IPO8O15397 1037 aaKnown RBP17.03■□□□□ 0.32
VPS9D1-204ENST00000565023 TRIM27P14373 513 aa17.03■□□□□ 0.32
VPS9D1-204ENST00000565023 RFX5P48382 616 aaPredicted RBP17.03■□□□□ 0.32
VPS9D1-204ENST00000565023 CHAF1AQ13111 956 aaPredicted RBP17.03■□□□□ 0.32
VPS9D1-204ENST00000565023 C2orf69Q8N8R5 385 aa17.03■□□□□ 0.32
VPS9D1-204ENST00000565023 FAM84BQ96KN1 310 aaPredicted RBP17.03■□□□□ 0.32
VPS9D1-204ENST00000565023 PCDHAC2Q9Y5I4 1007 aa17.03■□□□□ 0.32
VPS9D1-204ENST00000565023 FRAT2O75474 233 aaPredicted RBP17.02■□□□□ 0.32
VPS9D1-204ENST00000565023 PDE8BO95263 885 aa17.02■□□□□ 0.32
VPS9D1-204ENST00000565023 RBM5P52756 815 aaKnown RBP eCLIP17.02■□□□□ 0.32
VPS9D1-204ENST00000565023 PA2G4Q9UQ80 394 aaKnown RBP17.02■□□□□ 0.32
VPS9D1-204ENST00000565023 MYH13Q9UKX3 1938 aa17.02■□□□□ 0.31
VPS9D1-204ENST00000565023 EYA2O00167 538 aa17.01■□□□□ 0.31
VPS9D1-204ENST00000565023 PTPN12Q05209 780 aaKnown RBP17.01■□□□□ 0.31
VPS9D1-204ENST00000565023 DLGAP5Q15398 846 aa17.01■□□□□ 0.31
VPS9D1-204ENST00000565023 ATF7IPQ6VMQ6 1270 aa17.01■□□□□ 0.31
VPS9D1-204ENST00000565023 TDRD7Q8NHU6 1098 aaKnown RBP17.01■□□□□ 0.31
VPS9D1-204ENST00000565023 ARHGAP45Q92619 1136 aa17.01■□□□□ 0.31
VPS9D1-204ENST00000565023 PRDM10Q9NQV6 1147 aa17.01■□□□□ 0.31
VPS9D1-204ENST00000565023 CFAP100Q494V2 611 aa17■□□□□ 0.31
VPS9D1-204ENST00000565023 CAVIN4Q5BKX8 364 aa17■□□□□ 0.31
VPS9D1-204ENST00000565023 MFSD14BQ5SR56 506 aa17■□□□□ 0.31
VPS9D1-204ENST00000565023 INTS3Q68E01 1043 aaKnown RBP17■□□□□ 0.31
VPS9D1-204ENST00000565023 VGLL2Q8N8G2 317 aa17■□□□□ 0.31
VPS9D1-204ENST00000565023 ECM29Q5VYK3 1845 aa17■□□□□ 0.31
VPS9D1-204ENST00000565023 PITPNM2Q9BZ72 1349 aa16.99■□□□□ 0.31
VPS9D1-204ENST00000565023 CLRN2A0PK11 232 aa16.99■□□□□ 0.31
VPS9D1-204ENST00000565023 IFIT1P09914 478 aaKnown RBP16.99■□□□□ 0.31
VPS9D1-204ENST00000565023 BCAMP50895 628 aa16.99■□□□□ 0.31
VPS9D1-204ENST00000565023 MAP2K1Q02750 393 aaPredicted RBP16.99■□□□□ 0.31
VPS9D1-204ENST00000565023 TTLL12Q14166 644 aaPredicted RBP16.99■□□□□ 0.31
VPS9D1-204ENST00000565023 ZKSCAN2Q63HK3 967 aa16.99■□□□□ 0.31
VPS9D1-204ENST00000565023 MOB2Q70IA6 237 aa16.99■□□□□ 0.31
VPS9D1-204ENST00000565023 WBP1LQ9NX94 342 aa16.99■□□□□ 0.31
VPS9D1-204ENST00000565023 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.99■□□□□ 0.31
VPS9D1-204ENST00000565023 HDAC5Q9UQL6 1122 aa16.99■□□□□ 0.31
VPS9D1-204ENST00000565023 ARAP2Q8WZ64 1704 aa16.99■□□□□ 0.31
VPS9D1-204ENST00000565023 FAM205AQ6ZU69 1335 aa16.98■□□□□ 0.31
VPS9D1-204ENST00000565023 GNAI3P08754 354 aa16.98■□□□□ 0.31
VPS9D1-204ENST00000565023 SLC5A1P13866 664 aa16.98■□□□□ 0.31
VPS9D1-204ENST00000565023 PRKG1Q13976 671 aa16.98■□□□□ 0.31
VPS9D1-204ENST00000565023 PUM3Q15397 648 aaKnown RBP16.98■□□□□ 0.31
VPS9D1-204ENST00000565023 RGMBQ6NW40 437 aa16.98■□□□□ 0.31
VPS9D1-204ENST00000565023 ATG9AQ7Z3C6 839 aa16.98■□□□□ 0.31
VPS9D1-204ENST00000565023 FBXO33Q7Z6M2 555 aa16.98■□□□□ 0.31
VPS9D1-204ENST00000565023 TMEM57Q8N5G2 664 aa16.98■□□□□ 0.31
VPS9D1-204ENST00000565023 BEGAINQ9BUH8 593 aa16.98■□□□□ 0.31
VPS9D1-204ENST00000565023 VEZTQ9HBM0 779 aa16.98■□□□□ 0.31
VPS9D1-204ENST00000565023 TTF2Q9UNY4 1162 aaKnown RBP16.98■□□□□ 0.31
VPS9D1-204ENST00000565023 THSD7BQ9C0I4 1608 aa16.98■□□□□ 0.31
VPS9D1-204ENST00000565023 CTCFP49711 727 aaPredicted RBP16.97■□□□□ 0.31
VPS9D1-204ENST00000565023 ZNF157P51786 506 aaPredicted RBP16.97■□□□□ 0.31
VPS9D1-204ENST00000565023 ZIC5Q96T25 663 aa16.97■□□□□ 0.31
VPS9D1-204ENST00000565023 CEP126Q9P2H0 1117 aa16.97■□□□□ 0.31
VPS9D1-204ENST00000565023 TSKSQ9UJT2 592 aa16.97■□□□□ 0.31
VPS9D1-204ENST00000565023 SRGAP3O43295 1099 aa16.96■□□□□ 0.31
VPS9D1-204ENST00000565023 LBX1P52954 281 aa16.96■□□□□ 0.31
VPS9D1-204ENST00000565023 FKBP1AP62942 108 aaKnown RBP16.96■□□□□ 0.31
VPS9D1-204ENST00000565023 GRIK5Q16478 980 aa16.96■□□□□ 0.31
VPS9D1-204ENST00000565023 ATP2B3Q16720 1220 aa16.96■□□□□ 0.31
VPS9D1-204ENST00000565023 APOBEC3FQ8IUX4 373 aaKnown RBP16.96■□□□□ 0.31
VPS9D1-204ENST00000565023 ZBED3Q96IU2 234 aaPredicted RBP16.96■□□□□ 0.31
VPS9D1-204ENST00000565023 HHIPL1Q96JK4 782 aa16.96■□□□□ 0.31
VPS9D1-204ENST00000565023 PRMT6Q96LA8 375 aaPredicted RBP16.96■□□□□ 0.31
VPS9D1-204ENST00000565023 PAPPA2Q9BXP8 1791 aa16.96■□□□□ 0.31
VPS9D1-204ENST00000565023 TNRC18O15417 2968 aaPredicted RBP16.96■□□□□ 0.31
VPS9D1-204ENST00000565023 AOX1Q06278 1338 aa16.96■□□□□ 0.3
VPS9D1-204ENST00000565023 UBE2Q2LH0YL09 131 aa16.95■□□□□ 0.3
VPS9D1-204ENST00000565023 MYO1BO43795 1136 aa16.95■□□□□ 0.3
VPS9D1-204ENST00000565023 FGFR2P21802 821 aa16.95■□□□□ 0.3
VPS9D1-204ENST00000565023 NF2P35240 595 aa16.95■□□□□ 0.3
VPS9D1-204ENST00000565023 MMP14P50281 582 aa16.95■□□□□ 0.3
VPS9D1-204ENST00000565023 FTSJ3Q8IY81 847 aaKnown RBP16.95■□□□□ 0.3
VPS9D1-204ENST00000565023 LPIN2Q92539 896 aa16.95■□□□□ 0.3
VPS9D1-204ENST00000565023 SPDYE2BA6NHP3 402 aa16.94■□□□□ 0.3
VPS9D1-204ENST00000565023 GNAI2P04899 355 aa16.94■□□□□ 0.3
VPS9D1-204ENST00000565023 SPDYE6P0CI01 402 aa16.94■□□□□ 0.3
VPS9D1-204ENST00000565023 MAP2K2P36507 400 aa16.94■□□□□ 0.3
VPS9D1-204ENST00000565023 FZD1Q9UP38 647 aa16.94■□□□□ 0.3
VPS9D1-204ENST00000565023 CIAO1O76071 339 aa16.93■□□□□ 0.3
VPS9D1-204ENST00000565023 HSPA8P11142 646 aaKnown RBP16.93■□□□□ 0.3
VPS9D1-204ENST00000565023 IL15P40933 162 aaPredicted RBP16.93■□□□□ 0.3
VPS9D1-204ENST00000565023 NOGQ13253 232 aa16.93■□□□□ 0.3
VPS9D1-204ENST00000565023 ITPRIPQ8IWB1 547 aa16.93■□□□□ 0.3
VPS9D1-204ENST00000565023 MTMR14Q8NCE2 650 aa16.93■□□□□ 0.3
VPS9D1-204ENST00000565023 TDRD3Q9H7E2 651 aaKnown RBP16.93■□□□□ 0.3
VPS9D1-204ENST00000565023 C1orf115Q9H7X2 142 aa16.93■□□□□ 0.3
VPS9D1-204ENST00000565023 COPRSQ9NQ92 184 aa16.93■□□□□ 0.3
VPS9D1-204ENST00000565023 ADORA1P30542 326 aa16.92■□□□□ 0.3
VPS9D1-204ENST00000565023 CRKP46108 304 aa16.92■□□□□ 0.3
VPS9D1-204ENST00000565023 KIF23Q02241 960 aaPredicted RBP16.92■□□□□ 0.3
VPS9D1-204ENST00000565023 DZIP1LQ8IYY4 767 aaKnown RBP16.92■□□□□ 0.3
VPS9D1-204ENST00000565023 CCDC102AQ96A19 550 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms