RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 TDRD7Q8NHU6 1098 aaKnown RBP17.63■□□□□ 0.41
SMPD3-204ENST00000563396 FBXO3Q9UK99 471 aa17.63■□□□□ 0.41
SMPD3-204ENST00000563396 SASH1O94885 1247 aa17.62■□□□□ 0.41
SMPD3-204ENST00000563396 TRIM27P14373 513 aa17.62■□□□□ 0.41
SMPD3-204ENST00000563396 MAP2K2P36507 400 aa17.62■□□□□ 0.41
SMPD3-204ENST00000563396 PTPN12Q05209 780 aaKnown RBP17.62■□□□□ 0.41
SMPD3-204ENST00000563396 METTL24Q5JXM2 366 aa17.62■□□□□ 0.41
SMPD3-204ENST00000563396 COL13A1Q5TAT6 717 aaPredicted RBP17.62■□□□□ 0.41
SMPD3-204ENST00000563396 KLHDC4Q8TBB5 520 aa17.62■□□□□ 0.41
SMPD3-204ENST00000563396 FAM84BQ96KN1 310 aaPredicted RBP17.62■□□□□ 0.41
SMPD3-204ENST00000563396 MEIS3Q99687 375 aa17.62■□□□□ 0.41
SMPD3-204ENST00000563396 EYA2O00167 538 aa17.61■□□□□ 0.41
SMPD3-204ENST00000563396 FGFR2P21802 821 aa17.61■□□□□ 0.41
SMPD3-204ENST00000563396 HIBADHP31937 336 aaKnown RBP17.61■□□□□ 0.41
SMPD3-204ENST00000563396 GYG1P46976 350 aa17.61■□□□□ 0.41
SMPD3-204ENST00000563396 HUNKP57058 714 aa17.61■□□□□ 0.41
SMPD3-204ENST00000563396 FKBP1BP68106 108 aa17.61■□□□□ 0.41
SMPD3-204ENST00000563396 PAXIP1Q6ZW49 1069 aaPredicted RBP17.61■□□□□ 0.41
SMPD3-204ENST00000563396 HDAC5Q9UQL6 1122 aa17.61■□□□□ 0.41
SMPD3-204ENST00000563396 CIAO1O76071 339 aa17.6■□□□□ 0.41
SMPD3-204ENST00000563396 PUM3Q15397 648 aaKnown RBP17.6■□□□□ 0.41
SMPD3-204ENST00000563396 ATF7IPQ6VMQ6 1270 aa17.6■□□□□ 0.41
SMPD3-204ENST00000563396 FBXO33Q7Z6M2 555 aa17.6■□□□□ 0.41
SMPD3-204ENST00000563396 APOBEC3FQ8IUX4 373 aaKnown RBP17.6■□□□□ 0.41
SMPD3-204ENST00000563396 C2orf69Q8N8R5 385 aa17.6■□□□□ 0.41
SMPD3-204ENST00000563396 AIDAQ96BJ3 306 aa17.6■□□□□ 0.41
SMPD3-204ENST00000563396 LRRFIP2Q9Y608 721 aaKnown RBP17.6■□□□□ 0.41
SMPD3-204ENST00000563396 SSC5DA1L4H1 1573 aa17.59■□□□□ 0.41
SMPD3-204ENST00000563396 IPO8O15397 1037 aaKnown RBP17.59■□□□□ 0.41
SMPD3-204ENST00000563396 CTCFP49711 727 aaPredicted RBP17.59■□□□□ 0.41
SMPD3-204ENST00000563396 MTX1Q13505 466 aa17.59■□□□□ 0.41
SMPD3-204ENST00000563396 ATG9AQ7Z3C6 839 aa17.59■□□□□ 0.41
SMPD3-204ENST00000563396 PRDM10Q9NQV6 1147 aa17.59■□□□□ 0.41
SMPD3-204ENST00000563396 OTOFQ9HC10 1997 aa17.59■□□□□ 0.41
SMPD3-204ENST00000563396 FAM155AB1AL88 458 aaPredicted RBP17.58■□□□□ 0.4
SMPD3-204ENST00000563396 AOC2O75106 756 aa17.58■□□□□ 0.4
SMPD3-204ENST00000563396 BCAR3O75815 825 aa17.58■□□□□ 0.4
SMPD3-204ENST00000563396 GNAI3P08754 354 aa17.58■□□□□ 0.4
SMPD3-204ENST00000563396 NOGQ13253 232 aa17.58■□□□□ 0.4
SMPD3-204ENST00000563396 RGMBQ6NW40 437 aa17.58■□□□□ 0.4
SMPD3-204ENST00000563396 SPDYE2BA6NHP3 402 aa17.57■□□□□ 0.4
SMPD3-204ENST00000563396 SPDYE6P0CI01 402 aa17.57■□□□□ 0.4
SMPD3-204ENST00000563396 HSPA8P11142 646 aaKnown RBP17.57■□□□□ 0.4
SMPD3-204ENST00000563396 MFSD14BQ5SR56 506 aa17.57■□□□□ 0.4
SMPD3-204ENST00000563396 COPRSQ9NQ92 184 aa17.57■□□□□ 0.4
SMPD3-204ENST00000563396 JAG2Q9Y219 1238 aa17.57■□□□□ 0.4
SMPD3-204ENST00000563396 AKAP11Q9UKA4 1901 aa17.57■□□□□ 0.4
SMPD3-204ENST00000563396 SLC10A3P09131 477 aa17.56■□□□□ 0.4
SMPD3-204ENST00000563396 GRM1Q13255 1194 aa17.56■□□□□ 0.4
SMPD3-204ENST00000563396 DLGAP5Q15398 846 aa17.56■□□□□ 0.4
SMPD3-204ENST00000563396 CAVIN4Q5BKX8 364 aa17.56■□□□□ 0.4
SMPD3-204ENST00000563396 LPIN2Q92539 896 aa17.56■□□□□ 0.4
SMPD3-204ENST00000563396 SERPINA10Q9UK55 444 aa17.56■□□□□ 0.4
SMPD3-204ENST00000563396 TNNQ9UQP3 1299 aa17.56■□□□□ 0.4
SMPD3-204ENST00000563396 PPP2R3BQ9Y5P8 575 aa17.56■□□□□ 0.4
SMPD3-204ENST00000563396 ZBTB22O15209 634 aa17.55■□□□□ 0.4
SMPD3-204ENST00000563396 IFIT1P09914 478 aaKnown RBP17.55■□□□□ 0.4
SMPD3-204ENST00000563396 CFAP100Q494V2 611 aa17.55■□□□□ 0.4
SMPD3-204ENST00000563396 TBC1D22AQ8WUA7 517 aa17.55■□□□□ 0.4
SMPD3-204ENST00000563396 SCAF8Q9UPN6 1271 aaKnown RBP17.55■□□□□ 0.4
SMPD3-204ENST00000563396 AOX1Q06278 1338 aa17.54■□□□□ 0.4
SMPD3-204ENST00000563396 F8W031 263 aaPredicted RBP17.54■□□□□ 0.4
SMPD3-204ENST00000563396 CA12O43570 354 aa17.54■□□□□ 0.4
SMPD3-204ENST00000563396 SLC5A1P13866 664 aa17.54■□□□□ 0.4
SMPD3-204ENST00000563396 IL15P40933 162 aaPredicted RBP17.54■□□□□ 0.4
SMPD3-204ENST00000563396 ZKSCAN2Q63HK3 967 aa17.54■□□□□ 0.4
SMPD3-204ENST00000563396 VPS37DQ86XT2 251 aa17.54■□□□□ 0.4
SMPD3-204ENST00000563396 RASAL3Q86YV0 1011 aa17.54■□□□□ 0.4
SMPD3-204ENST00000563396 CCDC102AQ96A19 550 aa17.54■□□□□ 0.4
SMPD3-204ENST00000563396 PCDHAC2Q9Y5I4 1007 aa17.54■□□□□ 0.4
SMPD3-204ENST00000563396 FRAT1Q92837 279 aaPredicted RBP17.53■□□□□ 0.4
SMPD3-204ENST00000563396 PRMT6Q96LA8 375 aaPredicted RBP17.53■□□□□ 0.4
SMPD3-204ENST00000563396 SIL1Q9H173 461 aa17.53■□□□□ 0.4
SMPD3-204ENST00000563396 TTF2Q9UNY4 1162 aaKnown RBP17.53■□□□□ 0.4
SMPD3-204ENST00000563396 MYO1BO43795 1136 aa17.52■□□□□ 0.4
SMPD3-204ENST00000563396 NF2P35240 595 aa17.52■□□□□ 0.4
SMPD3-204ENST00000563396 BCAMP50895 628 aa17.52■□□□□ 0.4
SMPD3-204ENST00000563396 ZNF157P51786 506 aaPredicted RBP17.52■□□□□ 0.4
SMPD3-204ENST00000563396 LBX1P52954 281 aa17.52■□□□□ 0.4
SMPD3-204ENST00000563396 HDLBPQ00341 1268 aaKnown RBP17.52■□□□□ 0.4
SMPD3-204ENST00000563396 SPDYE2Q495Y8 402 aa17.52■□□□□ 0.4
SMPD3-204ENST00000563396 TNS4Q8IZW8 715 aa17.52■□□□□ 0.4
SMPD3-204ENST00000563396 ZIC5Q96T25 663 aa17.52■□□□□ 0.4
SMPD3-204ENST00000563396 BEGAINQ9BUH8 593 aa17.52■□□□□ 0.4
SMPD3-204ENST00000563396 DEFB129Q9H1M3 183 aa17.52■□□□□ 0.4
SMPD3-204ENST00000563396 PA2G4Q9UQ80 394 aaKnown RBP17.52■□□□□ 0.4
SMPD3-204ENST00000563396 SUGT1Q9Y2Z0 365 aa17.52■□□□□ 0.4
SMPD3-204ENST00000563396 SRGAP3O43295 1099 aa17.51■□□□□ 0.39
SMPD3-204ENST00000563396 GRIK5Q16478 980 aa17.51■□□□□ 0.39
SMPD3-204ENST00000563396 ATP2B3Q16720 1220 aa17.51■□□□□ 0.39
SMPD3-204ENST00000563396 PRAMEF18Q5VWM3 479 aa17.51■□□□□ 0.39
SMPD3-204ENST00000563396 TMEM57Q8N5G2 664 aa17.51■□□□□ 0.39
SMPD3-204ENST00000563396 CLUAP1Q96AJ1 413 aa17.51■□□□□ 0.39
SMPD3-204ENST00000563396 IQSEC3Q9UPP2 1182 aaPredicted RBP17.51■□□□□ 0.39
SMPD3-204ENST00000563396 MAST3O60307 1309 aa17.5■□□□□ 0.39
SMPD3-204ENST00000563396 CLRN2A0PK11 232 aa17.5■□□□□ 0.39
SMPD3-204ENST00000563396 GNAI2P04899 355 aa17.5■□□□□ 0.39
SMPD3-204ENST00000563396 CRKP46108 304 aa17.5■□□□□ 0.39
SMPD3-204ENST00000563396 MOB2Q70IA6 237 aa17.5■□□□□ 0.39
SMPD3-204ENST00000563396 SAGE1Q9NXZ1 904 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms